Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 KRT18P20-201ENST00000548986 1279 ntBASIC22.01■■□□□ 1.11
EBF3Q9H4W6 AL138781.1-201ENST00000566567 1274 ntBASIC22.01■■□□□ 1.11
EBF3Q9H4W6 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
EBF3Q9H4W6 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
EBF3Q9H4W6 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22■■□□□ 1.11
EBF3Q9H4W6 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
EBF3Q9H4W6 CD99P1-205ENST00000527459 561 ntBASIC22■■□□□ 1.11
EBF3Q9H4W6 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
EBF3Q9H4W6 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
EBF3Q9H4W6 AP006587.3-201ENST00000525742 1516 ntBASIC22■■□□□ 1.11
EBF3Q9H4W6 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
EBF3Q9H4W6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 SLC29A4P1-201ENST00000398760 971 ntBASIC21.98■■□□□ 1.11
EBF3Q9H4W6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 EEF1DP3-203ENST00000566025 782 ntBASIC21.98■■□□□ 1.11
EBF3Q9H4W6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 AC007375.3-201ENST00000600936 2314 ntBASIC21.98■■□□□ 1.11
EBF3Q9H4W6 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EBF3Q9H4W6 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 AF201337.1-201ENST00000520239 748 ntBASIC21.97■■□□□ 1.11
EBF3Q9H4W6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
EBF3Q9H4W6 AC137767.1-201ENST00000602918 1920 ntBASIC21.96■■□□□ 1.11
EBF3Q9H4W6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 AC105036.2-201ENST00000569468 176 ntBASIC21.96■■□□□ 1.11
EBF3Q9H4W6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EBF3Q9H4W6 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 AC087742.1-201ENST00000575880 1738 ntBASIC21.95■■□□□ 1.1
EBF3Q9H4W6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 AC053503.5-201ENST00000601508 636 ntBASIC21.95■■□□□ 1.1
EBF3Q9H4W6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms