Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.59■□□□□ 0.57
LIME1Q9H400 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 AC098934.4-201ENST00000564127 592 ntBASIC18.59■□□□□ 0.57
LIME1Q9H400 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LIME1Q9H400 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LIME1Q9H400 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIME1Q9H400 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIME1Q9H400 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIME1Q9H400 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIME1Q9H400 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIME1Q9H400 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIME1Q9H400 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIME1Q9H400 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
LIME1Q9H400 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.58■□□□□ 0.56
LIME1Q9H400 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIME1Q9H400 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.58■□□□□ 0.56
LIME1Q9H400 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIME1Q9H400 OXCT2P1-201ENST00000447263 1535 ntBASIC18.58■□□□□ 0.56
LIME1Q9H400 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.57■□□□□ 0.56
LIME1Q9H400 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.57■□□□□ 0.56
LIME1Q9H400 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LIME1Q9H400 AL137060.1-201ENST00000618151 2648 ntBASIC18.57■□□□□ 0.56
LIME1Q9H400 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.57■□□□□ 0.56
LIME1Q9H400 AC080038.3-201ENST00000623346 1952 ntBASIC18.57■□□□□ 0.56
LIME1Q9H400 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIME1Q9H400 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIME1Q9H400 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIME1Q9H400 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIME1Q9H400 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.56■□□□□ 0.56
LIME1Q9H400 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.56■□□□□ 0.56
LIME1Q9H400 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.56■□□□□ 0.56
LIME1Q9H400 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.56■□□□□ 0.56
LIME1Q9H400 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.56■□□□□ 0.56
LIME1Q9H400 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
LIME1Q9H400 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIME1Q9H400 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIME1Q9H400 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.55■□□□□ 0.56
LIME1Q9H400 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.55■□□□□ 0.56
LIME1Q9H400 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
LIME1Q9H400 AC005224.4-201ENST00000583262 1652 ntBASIC18.55■□□□□ 0.56
LIME1Q9H400 KRT87P-202ENST00000534226 1464 ntBASIC18.55■□□□□ 0.56
LIME1Q9H400 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LIME1Q9H400 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.55■□□□□ 0.56
LIME1Q9H400 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.55■□□□□ 0.56
LIME1Q9H400 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LIME1Q9H400 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LIME1Q9H400 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIME1Q9H400 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIME1Q9H400 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.54■□□□□ 0.56
LIME1Q9H400 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
LIME1Q9H400 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
LIME1Q9H400 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.54■□□□□ 0.56
LIME1Q9H400 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.54■□□□□ 0.56
LIME1Q9H400 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.54■□□□□ 0.56
LIME1Q9H400 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LIME1Q9H400 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIME1Q9H400 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.53■□□□□ 0.56
LIME1Q9H400 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LIME1Q9H400 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
LIME1Q9H400 AF201337.1-201ENST00000520239 748 ntBASIC18.53■□□□□ 0.56
LIME1Q9H400 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LIME1Q9H400 AC105036.2-201ENST00000569468 176 ntBASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms