Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP44Q9H0E7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP44Q9H0E7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC26.56■■□□□ 1.84
USP44Q9H0E7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP44Q9H0E7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP44Q9H0E7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.56■■□□□ 1.84
USP44Q9H0E7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
USP44Q9H0E7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP44Q9H0E7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP44Q9H0E7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP44Q9H0E7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 SLC7A5P2-201ENST00000553010 536 ntBASIC26.55■■□□□ 1.84
USP44Q9H0E7 UBE2DNL-204ENST00000602536 740 ntBASIC26.55■■□□□ 1.84
USP44Q9H0E7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP44Q9H0E7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP44Q9H0E7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
USP44Q9H0E7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC26.54■■□□□ 1.84
USP44Q9H0E7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
USP44Q9H0E7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
USP44Q9H0E7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP44Q9H0E7 AC061975.6-201ENST00000579045 1553 ntBASIC26.54■■□□□ 1.84
USP44Q9H0E7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 KRT18P20-201ENST00000548986 1279 ntBASIC26.53■■□□□ 1.84
USP44Q9H0E7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP44Q9H0E7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC26.53■■□□□ 1.84
USP44Q9H0E7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
USP44Q9H0E7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 AC016769.1-201ENST00000409132 1010 ntBASIC26.52■■□□□ 1.84
USP44Q9H0E7 FBXW4P1-201ENST00000426721 2239 ntBASIC26.52■■□□□ 1.84
USP44Q9H0E7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC26.52■■□□□ 1.84
USP44Q9H0E7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC26.52■■□□□ 1.84
USP44Q9H0E7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 AC079834.2-201ENST00000609776 1949 ntBASIC26.52■■□□□ 1.84
USP44Q9H0E7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP44Q9H0E7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP44Q9H0E7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP44Q9H0E7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.51■■□□□ 1.83
USP44Q9H0E7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP44Q9H0E7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 LINC00565-201ENST00000562710 2331 ntBASIC26.5■■□□□ 1.83
USP44Q9H0E7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
USP44Q9H0E7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC26.5■■□□□ 1.83
USP44Q9H0E7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.5■■□□□ 1.83
USP44Q9H0E7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC26.5■■□□□ 1.83
USP44Q9H0E7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP44Q9H0E7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.49■■□□□ 1.83
USP44Q9H0E7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP44Q9H0E7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP44Q9H0E7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP44Q9H0E7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.49■■□□□ 1.83
USP44Q9H0E7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP44Q9H0E7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC26.49■■□□□ 1.83
USP44Q9H0E7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms