Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LIMD2Q9BT23 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 BCL2-203ENST00000589955 5011 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 AL136116.3-201ENST00000402907 1138 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 AC010141.3-201ENST00000456659 717 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 AC131281.2-201ENST00000520478 145 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 AL034346.1-201ENST00000568244 1277 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 AC131212.1-201ENST00000613771 668 ntBASIC12.51□□□□□ -0.41
LIMD2Q9BT23 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 USP45-205ENST00000472914 1617 ntTSL 5 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LIMD2Q9BT23 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 QDPR-206ENST00000508623 601 ntTSL 3 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC12.5□□□□□ -0.41
LIMD2Q9BT23 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 RASSF1-AS1-201ENST00000629828 790 ntBASIC12.5□□□□□ -0.41
LIMD2Q9BT23 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 OR7E47P-201ENST00000546390 1422 ntBASIC12.5□□□□□ -0.41
LIMD2Q9BT23 STX4-202ENST00000394998 1498 ntTSL 2 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LIMD2Q9BT23 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 BID-212ENST00000614949 1988 ntTSL 5 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 C11orf96-202ENST00000528572 1834 ntBASIC12.49□□□□□ -0.41
LIMD2Q9BT23 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 AC079089.2-201ENST00000531211 1277 ntBASIC12.49□□□□□ -0.41
LIMD2Q9BT23 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 AC090340.1-201ENST00000620778 4980 ntBASIC12.49□□□□□ -0.41
LIMD2Q9BT23 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.49□□□□□ -0.41
LIMD2Q9BT23 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms