Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
LYSMD1Q96S90 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 FBXW4P1-201ENST00000426721 2239 ntBASIC21.11■□□□□ 0.97
LYSMD1Q96S90 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 AC008175.2-201ENST00000612840 297 ntBASIC21.11■□□□□ 0.97
LYSMD1Q96S90 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LYSMD1Q96S90 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 LINC00565-201ENST00000562710 2331 ntBASIC21.1■□□□□ 0.97
LYSMD1Q96S90 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 AC006015.1-201ENST00000429970 570 ntBASIC21.1■□□□□ 0.97
LYSMD1Q96S90 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LYSMD1Q96S90 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LYSMD1Q96S90 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 KRT18P11-201ENST00000435214 1283 ntBASIC21.08■□□□□ 0.97
LYSMD1Q96S90 SLC7A5P1-201ENST00000568957 537 ntBASIC21.08■□□□□ 0.97
LYSMD1Q96S90 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LYSMD1Q96S90 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.08■□□□□ 0.96
LYSMD1Q96S90 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 KRT16P2-201ENST00000414673 1423 ntBASIC21.07■□□□□ 0.96
LYSMD1Q96S90 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AC137761.2-201ENST00000561729 223 ntBASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AC145350.3-201ENST00000569033 163 ntBASIC21.07■□□□□ 0.96
LYSMD1Q96S90 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LYSMD1Q96S90 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
LYSMD1Q96S90 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms