Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 C11orf96-202ENST00000528572 1834 ntBASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD1Q96NR3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 AC137761.2-201ENST00000561729 223 ntBASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 AC145350.3-201ENST00000569033 163 ntBASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PTCHD1Q96NR3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 AC010542.4-201ENST00000563151 1910 ntBASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 IKBKGP1-201ENST00000612193 1073 ntBASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 PKD1P6-201ENST00000343738 4769 ntBASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTCHD1Q96NR3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 AC016769.1-201ENST00000409132 1010 ntBASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 EEF1DP3-203ENST00000566025 782 ntBASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 AC053503.5-201ENST00000601508 636 ntBASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTCHD1Q96NR3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PTCHD1Q96NR3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms