Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 AC026310.3-201ENST00000625186 2373 ntBASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC144BQ3MJ40 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 AC005224.4-201ENST00000583262 1652 ntBASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 AL355802.2-201ENST00000402069 882 ntBASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC144BQ3MJ40 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 MIR663A-201ENST00000385250 93 ntBASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC144BQ3MJ40 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 AC104187.1-201ENST00000607510 612 ntBASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC144BQ3MJ40 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 MFSD11-216ENST00000590393 1141 ntBASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC144BQ3MJ40 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC144BQ3MJ40 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 AC009237.3-201ENST00000393279 1427 ntBASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 KRT87P-202ENST00000534226 1464 ntBASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 AC087742.1-201ENST00000575880 1738 ntBASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCDC144BQ3MJ40 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCDC144BQ3MJ40 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms