Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21■□□□□ 0.95
LRRK1Q38SD2 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21■□□□□ 0.95
LRRK1Q38SD2 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21■□□□□ 0.95
LRRK1Q38SD2 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21■□□□□ 0.95
LRRK1Q38SD2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21■□□□□ 0.95
LRRK1Q38SD2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21■□□□□ 0.95
LRRK1Q38SD2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 GXYLT1P5-201ENST00000614548 1189 ntBASIC21■□□□□ 0.95
LRRK1Q38SD2 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21■□□□□ 0.95
LRRK1Q38SD2 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRRK1Q38SD2 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 POU5F1P4-201ENST00000413175 1085 ntBASIC20.99■□□□□ 0.95
LRRK1Q38SD2 CYP2T1P-201ENST00000432607 1285 ntBASIC20.99■□□□□ 0.95
LRRK1Q38SD2 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LRRK1Q38SD2 GUSBP6-202ENST00000438529 1198 ntBASIC20.99■□□□□ 0.95
LRRK1Q38SD2 AL117328.2-201ENST00000624617 1940 ntBASIC20.98■□□□□ 0.95
LRRK1Q38SD2 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 AC068338.2-201ENST00000563278 1430 ntBASIC20.98■□□□□ 0.95
LRRK1Q38SD2 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRRK1Q38SD2 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 RBM17P2-201ENST00000616397 1405 ntBASIC20.97■□□□□ 0.95
LRRK1Q38SD2 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 AC104771.1-201ENST00000603335 964 ntBASIC20.97■□□□□ 0.95
LRRK1Q38SD2 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRRK1Q38SD2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 HLA-L-209ENST00000420110 1011 ntBASIC20.96■□□□□ 0.95
LRRK1Q38SD2 AC007322.4-201ENST00000509611 723 ntBASIC20.96■□□□□ 0.95
LRRK1Q38SD2 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRRK1Q38SD2 NCF1B-203ENST00000435988 1254 ntBASIC20.95■□□□□ 0.94
LRRK1Q38SD2 AF201337.1-201ENST00000520239 748 ntBASIC20.95■□□□□ 0.94
LRRK1Q38SD2 AC098934.4-201ENST00000564127 592 ntBASIC20.95■□□□□ 0.94
LRRK1Q38SD2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms