Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC15.83■□□□□ 0.12
FOXA3P55318 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
FOXA3P55318 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
FOXA3P55318 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 AC087289.5-201ENST00000586076 3175 ntBASIC15.83■□□□□ 0.12
FOXA3P55318 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
FOXA3P55318 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC15.83■□□□□ 0.12
FOXA3P55318 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
FOXA3P55318 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC15.83■□□□□ 0.12
FOXA3P55318 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA3P55318 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXA3P55318 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
FOXA3P55318 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA3P55318 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA3P55318 IDNK-201ENST00000376417 511 ntTSL 5 BASIC15.82■□□□□ 0.12
FOXA3P55318 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXA3P55318 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC15.82■□□□□ 0.12
FOXA3P55318 U85056.1-201ENST00000616429 682 ntBASIC15.82■□□□□ 0.12
FOXA3P55318 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA3P55318 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 AC026471.6-201ENST00000622954 1905 ntBASIC15.82■□□□□ 0.12
FOXA3P55318 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
FOXA3P55318 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.82■□□□□ 0.12
FOXA3P55318 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
FOXA3P55318 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXA3P55318 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
FOXA3P55318 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
FOXA3P55318 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 PARN-205ENST00000539279 1557 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA3P55318 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA3P55318 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 AFG3L1P-217ENST00000557444 2447 ntBASIC15.8■□□□□ 0.12
FOXA3P55318 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
FOXA3P55318 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA3P55318 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
FOXA3P55318 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
FOXA3P55318 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
FOXA3P55318 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
FOXA3P55318 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 AC005703.6-201ENST00000623265 1329 ntBASIC15.79■□□□□ 0.12
FOXA3P55318 AP005212.1-201ENST00000581547 1997 ntBASIC15.79■□□□□ 0.12
FOXA3P55318 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA3P55318 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC15.79■□□□□ 0.12
FOXA3P55318 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXA3P55318 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXA3P55318 ABHD17AP3-201ENST00000503096 1137 ntBASIC15.79■□□□□ 0.12
FOXA3P55318 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXA3P55318 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA3P55318 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms