Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CDH4P55283 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.67■■□□□ 1.06
CDH4P55283 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.67■■□□□ 1.06
CDH4P55283 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDH4P55283 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.67■■□□□ 1.06
CDH4P55283 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.67■■□□□ 1.06
CDH4P55283 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.66■■□□□ 1.06
CDH4P55283 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.66■■□□□ 1.06
CDH4P55283 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
CDH4P55283 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.66■■□□□ 1.06
CDH4P55283 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.66■■□□□ 1.06
CDH4P55283 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 AC120498.10-201ENST00000621827 505 ntBASIC21.66■■□□□ 1.06
CDH4P55283 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CDH4P55283 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH4P55283 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.65■■□□□ 1.06
CDH4P55283 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CDH4P55283 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.65■■□□□ 1.06
CDH4P55283 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 SLC7A5P1-201ENST00000568957 537 ntBASIC21.65■■□□□ 1.06
CDH4P55283 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.65■■□□□ 1.06
CDH4P55283 BID-214ENST00000617586 542 ntTSL 5 BASIC21.65■■□□□ 1.06
CDH4P55283 MYCNOS-205ENST00000641950 531 ntBASIC21.65■■□□□ 1.06
CDH4P55283 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.65■■□□□ 1.06
CDH4P55283 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CDH4P55283 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.65■■□□□ 1.06
CDH4P55283 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CDH4P55283 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
CDH4P55283 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CDH4P55283 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.64■■□□□ 1.05
CDH4P55283 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.64■■□□□ 1.05
CDH4P55283 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.64■■□□□ 1.05
CDH4P55283 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CDH4P55283 SLC7A5P2-201ENST00000553010 536 ntBASIC21.64■■□□□ 1.05
CDH4P55283 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.64■■□□□ 1.05
CDH4P55283 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CDH4P55283 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.63■■□□□ 1.05
CDH4P55283 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.63■■□□□ 1.05
CDH4P55283 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.63■■□□□ 1.05
CDH4P55283 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.63■■□□□ 1.05
CDH4P55283 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDH4P55283 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CDH4P55283 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 AC061975.6-201ENST00000579045 1553 ntBASIC21.62■■□□□ 1.05
CDH4P55283 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CDH4P55283 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.62■■□□□ 1.05
CDH4P55283 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.62■■□□□ 1.05
CDH4P55283 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CDH4P55283 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
CDH4P55283 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.62■■□□□ 1.05
CDH4P55283 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.62■■□□□ 1.05
CDH4P55283 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.62■■□□□ 1.05
CDH4P55283 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.62■■□□□ 1.05
CDH4P55283 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 AC011767.1-201ENST00000617410 1153 ntBASIC21.62■■□□□ 1.05
CDH4P55283 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms