Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
HMGCS2P54868 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
HMGCS2P54868 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.57■■□□□ 1.52
HMGCS2P54868 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.57■■□□□ 1.52
HMGCS2P54868 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.57■■□□□ 1.52
HMGCS2P54868 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
HMGCS2P54868 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC24.57■■□□□ 1.52
HMGCS2P54868 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
HMGCS2P54868 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.57■■□□□ 1.52
HMGCS2P54868 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
HMGCS2P54868 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC24.56■■□□□ 1.52
HMGCS2P54868 AC091874.3-201ENST00000512672 1195 ntBASIC24.56■■□□□ 1.52
HMGCS2P54868 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC24.56■■□□□ 1.52
HMGCS2P54868 AC243732.1-201ENST00000612648 864 ntBASIC24.56■■□□□ 1.52
HMGCS2P54868 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC24.56■■□□□ 1.52
HMGCS2P54868 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGCS2P54868 AC093323.1-202ENST00000635031 2045 ntBASIC24.56■■□□□ 1.52
HMGCS2P54868 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 AC003102.1-202ENST00000563394 1796 ntBASIC24.55■■□□□ 1.52
HMGCS2P54868 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.55■■□□□ 1.52
HMGCS2P54868 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 DUSP5P2-201ENST00000426873 1033 ntBASIC24.55■■□□□ 1.52
HMGCS2P54868 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC24.55■■□□□ 1.52
HMGCS2P54868 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC24.55■■□□□ 1.52
HMGCS2P54868 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.55■■□□□ 1.52
HMGCS2P54868 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
HMGCS2P54868 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
HMGCS2P54868 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
HMGCS2P54868 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.54■■□□□ 1.52
HMGCS2P54868 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC24.54■■□□□ 1.52
HMGCS2P54868 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC24.54■■□□□ 1.52
HMGCS2P54868 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.54■■□□□ 1.52
HMGCS2P54868 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
HMGCS2P54868 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 ESRRAP1-201ENST00000400596 1257 ntBASIC24.53■■□□□ 1.52
HMGCS2P54868 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC24.53■■□□□ 1.52
HMGCS2P54868 RPS2P52-201ENST00000469610 820 ntBASIC24.53■■□□□ 1.52
HMGCS2P54868 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC24.53■■□□□ 1.52
HMGCS2P54868 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.53■■□□□ 1.52
HMGCS2P54868 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGCS2P54868 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 AC098590.1-201ENST00000468126 897 ntBASIC24.52■■□□□ 1.52
HMGCS2P54868 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC24.52■■□□□ 1.52
HMGCS2P54868 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGCS2P54868 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
HMGCS2P54868 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HMGCS2P54868 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
HMGCS2P54868 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
HMGCS2P54868 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HMGCS2P54868 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 PBX1-209ENST00000485769 834 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC24.51■■□□□ 1.51
HMGCS2P54868 ADM-205ENST00000528544 586 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
HMGCS2P54868 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
HMGCS2P54868 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
HMGCS2P54868 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.51■■□□□ 1.51
HMGCS2P54868 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms