Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 IRS3P-201ENST00000223076 1006 ntBASIC19.8■□□□□ 0.76
RFX3P48380 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX3P48380 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.8■□□□□ 0.76
RFX3P48380 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.8■□□□□ 0.76
RFX3P48380 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX3P48380 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX3P48380 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX3P48380 AC012414.1-201ENST00000556676 535 ntBASIC19.79■□□□□ 0.76
RFX3P48380 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX3P48380 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RFX3P48380 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.79■□□□□ 0.76
RFX3P48380 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX3P48380 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX3P48380 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.78■□□□□ 0.76
RFX3P48380 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.78■□□□□ 0.76
RFX3P48380 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX3P48380 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX3P48380 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX3P48380 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.78■□□□□ 0.76
RFX3P48380 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.78■□□□□ 0.76
RFX3P48380 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX3P48380 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX3P48380 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.78■□□□□ 0.76
RFX3P48380 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX3P48380 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RFX3P48380 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RFX3P48380 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.77■□□□□ 0.76
RFX3P48380 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFX3P48380 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RFX3P48380 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.77■□□□□ 0.76
RFX3P48380 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RFX3P48380 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
RFX3P48380 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
RFX3P48380 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.76■□□□□ 0.75
RFX3P48380 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
RFX3P48380 BX005040.4-201ENST00000637145 1518 ntBASIC19.76■□□□□ 0.75
RFX3P48380 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.76■□□□□ 0.75
RFX3P48380 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFX3P48380 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
RFX3P48380 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.76■□□□□ 0.75
RFX3P48380 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.76■□□□□ 0.75
RFX3P48380 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.76■□□□□ 0.75
RFX3P48380 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFX3P48380 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.76■□□□□ 0.75
RFX3P48380 ZNRF2P3-201ENST00000424200 374 ntBASIC19.76■□□□□ 0.75
RFX3P48380 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.76■□□□□ 0.75
RFX3P48380 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
RFX3P48380 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFX3P48380 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.75■□□□□ 0.75
RFX3P48380 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.75■□□□□ 0.75
RFX3P48380 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.75■□□□□ 0.75
RFX3P48380 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.75■□□□□ 0.75
RFX3P48380 AL354811.1-201ENST00000610286 706 ntBASIC19.75■□□□□ 0.75
RFX3P48380 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.75■□□□□ 0.75
RFX3P48380 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 AP006587.3-201ENST00000525742 1516 ntBASIC19.75■□□□□ 0.75
RFX3P48380 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFX3P48380 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFX3P48380 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFX3P48380 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFX3P48380 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
RFX3P48380 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.74■□□□□ 0.75
RFX3P48380 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.74■□□□□ 0.75
RFX3P48380 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.74■□□□□ 0.75
RFX3P48380 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
RFX3P48380 AL358852.1-201ENST00000623174 1268 ntBASIC19.74■□□□□ 0.75
RFX3P48380 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
RFX3P48380 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms