Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC004911.1-201ENST00000416316 871 ntBASIC23.92■■□□□ 1.42
CIITAP33076 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.92■■□□□ 1.42
CIITAP33076 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.92■■□□□ 1.42
CIITAP33076 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.92■■□□□ 1.42
CIITAP33076 UBE2DNL-204ENST00000602536 740 ntBASIC23.92■■□□□ 1.42
CIITAP33076 AC008175.2-201ENST00000612840 297 ntBASIC23.92■■□□□ 1.42
CIITAP33076 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CIITAP33076 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.92■■□□□ 1.42
CIITAP33076 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.91■■□□□ 1.42
CIITAP33076 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.91■■□□□ 1.42
CIITAP33076 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.91■■□□□ 1.42
CIITAP33076 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.91■■□□□ 1.42
CIITAP33076 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
CIITAP33076 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CIITAP33076 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CIITAP33076 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.9■■□□□ 1.42
CIITAP33076 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.9■■□□□ 1.42
CIITAP33076 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.9■■□□□ 1.42
CIITAP33076 SLC7A5P2-201ENST00000553010 536 ntBASIC23.9■■□□□ 1.42
CIITAP33076 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.9■■□□□ 1.42
CIITAP33076 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 MYCNOS-205ENST00000641950 531 ntBASIC23.9■■□□□ 1.42
CIITAP33076 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.9■■□□□ 1.42
CIITAP33076 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.9■■□□□ 1.42
CIITAP33076 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CIITAP33076 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CIITAP33076 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CIITAP33076 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.89■■□□□ 1.41
CIITAP33076 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.89■■□□□ 1.41
CIITAP33076 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CIITAP33076 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.89■■□□□ 1.41
CIITAP33076 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.89■■□□□ 1.41
CIITAP33076 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.89■■□□□ 1.41
CIITAP33076 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CIITAP33076 AC061975.6-201ENST00000579045 1553 ntBASIC23.89■■□□□ 1.41
CIITAP33076 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
CIITAP33076 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.41
CIITAP33076 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CIITAP33076 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.88■■□□□ 1.41
CIITAP33076 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.88■■□□□ 1.41
CIITAP33076 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.88■■□□□ 1.41
CIITAP33076 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.88■■□□□ 1.41
CIITAP33076 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
CIITAP33076 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.88■■□□□ 1.41
CIITAP33076 MFSD11-216ENST00000590393 1141 ntBASIC23.88■■□□□ 1.41
CIITAP33076 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
CIITAP33076 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CIITAP33076 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.87■■□□□ 1.41
CIITAP33076 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.87■■□□□ 1.41
CIITAP33076 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.87■■□□□ 1.41
CIITAP33076 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.87■■□□□ 1.41
CIITAP33076 BID-214ENST00000617586 542 ntTSL 5 BASIC23.87■■□□□ 1.41
CIITAP33076 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.41
CIITAP33076 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CIITAP33076 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
CIITAP33076 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms