Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.87■□□□□ 0.45
USF1P22415 KRT18P20-201ENST00000548986 1279 ntBASIC17.87■□□□□ 0.45
USF1P22415 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.87■□□□□ 0.45
USF1P22415 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
USF1P22415 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.87■□□□□ 0.45
USF1P22415 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
USF1P22415 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 AP004607.7-201ENST00000527152 1677 ntBASIC17.87■□□□□ 0.45
USF1P22415 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USF1P22415 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.86■□□□□ 0.45
USF1P22415 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
USF1P22415 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.86■□□□□ 0.45
USF1P22415 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.86■□□□□ 0.45
USF1P22415 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.86■□□□□ 0.45
USF1P22415 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.86■□□□□ 0.45
USF1P22415 AC010141.2-201ENST00000452426 721 ntBASIC17.86■□□□□ 0.45
USF1P22415 SLC7A5P2-201ENST00000553010 536 ntBASIC17.86■□□□□ 0.45
USF1P22415 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
USF1P22415 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.86■□□□□ 0.45
USF1P22415 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
USF1P22415 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
USF1P22415 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
USF1P22415 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
USF1P22415 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
USF1P22415 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
USF1P22415 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.85■□□□□ 0.45
USF1P22415 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.85■□□□□ 0.45
USF1P22415 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.85■□□□□ 0.45
USF1P22415 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.85■□□□□ 0.45
USF1P22415 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
USF1P22415 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.85■□□□□ 0.45
USF1P22415 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.85■□□□□ 0.45
USF1P22415 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.85■□□□□ 0.45
USF1P22415 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.85■□□□□ 0.45
USF1P22415 AC138907.5-202ENST00000569484 235 ntBASIC17.85■□□□□ 0.45
USF1P22415 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.85■□□□□ 0.45
USF1P22415 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 OR7E47P-201ENST00000546390 1422 ntBASIC17.84■□□□□ 0.45
USF1P22415 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.84■□□□□ 0.45
USF1P22415 AF201337.1-201ENST00000520239 748 ntBASIC17.84■□□□□ 0.45
USF1P22415 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
USF1P22415 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USF1P22415 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.84■□□□□ 0.45
USF1P22415 AL034346.1-201ENST00000568244 1277 ntBASIC17.84■□□□□ 0.45
USF1P22415 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.84■□□□□ 0.45
USF1P22415 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.84■□□□□ 0.45
USF1P22415 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 GUSBP5-202ENST00000510805 1989 ntBASIC17.84■□□□□ 0.45
USF1P22415 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USF1P22415 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USF1P22415 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
USF1P22415 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USF1P22415 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
USF1P22415 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
USF1P22415 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
USF1P22415 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
USF1P22415 KRT18P6-201ENST00000555540 1265 ntBASIC17.83■□□□□ 0.44
USF1P22415 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.83■□□□□ 0.44
USF1P22415 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.83■□□□□ 0.44
USF1P22415 AC010536.3-201ENST00000620306 533 ntBASIC17.83■□□□□ 0.44
USF1P22415 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
USF1P22415 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
USF1P22415 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.82■□□□□ 0.44
USF1P22415 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.82■□□□□ 0.44
USF1P22415 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
USF1P22415 GUSBP6-202ENST00000438529 1198 ntBASIC17.82■□□□□ 0.44
USF1P22415 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USF1P22415 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms