Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.95■■□□□ 1.1
COL9A1P20849 AC008403.3-201ENST00000598924 454 ntBASIC21.95■■□□□ 1.1
COL9A1P20849 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.95■■□□□ 1.1
COL9A1P20849 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
COL9A1P20849 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
COL9A1P20849 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
COL9A1P20849 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.94■■□□□ 1.1
COL9A1P20849 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL9A1P20849 ANOS2P-203ENST00000472227 1816 ntBASIC21.94■■□□□ 1.1
COL9A1P20849 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.94■■□□□ 1.1
COL9A1P20849 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.94■■□□□ 1.1
COL9A1P20849 AC069236.1-201ENST00000604339 616 ntBASIC21.94■■□□□ 1.1
COL9A1P20849 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
COL9A1P20849 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL9A1P20849 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL9A1P20849 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL9A1P20849 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.94■■□□□ 1.1
COL9A1P20849 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL9A1P20849 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL9A1P20849 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.93■■□□□ 1.1
COL9A1P20849 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC21.93■■□□□ 1.1
COL9A1P20849 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL9A1P20849 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL9A1P20849 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.93■■□□□ 1.1
COL9A1P20849 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.93■■□□□ 1.1
COL9A1P20849 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.93■■□□□ 1.1
COL9A1P20849 AC005224.4-201ENST00000583262 1652 ntBASIC21.93■■□□□ 1.1
COL9A1P20849 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.93■■□□□ 1.1
COL9A1P20849 AC092865.7-201ENST00000641832 219 ntBASIC21.93■■□□□ 1.1
COL9A1P20849 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL9A1P20849 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.92■■□□□ 1.1
COL9A1P20849 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL9A1P20849 AC012618.2-201ENST00000428058 849 ntBASIC21.92■■□□□ 1.1
COL9A1P20849 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
COL9A1P20849 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL9A1P20849 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
COL9A1P20849 RN7SL471P-201ENST00000580476 299 ntBASIC21.92■■□□□ 1.1
COL9A1P20849 AC233702.5-201ENST00000584107 538 ntBASIC21.92■■□□□ 1.1
COL9A1P20849 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.92■■□□□ 1.1
COL9A1P20849 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL9A1P20849 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
COL9A1P20849 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
COL9A1P20849 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.91■■□□□ 1.1
COL9A1P20849 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.91■■□□□ 1.1
COL9A1P20849 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.91■■□□□ 1.1
COL9A1P20849 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.91■■□□□ 1.1
COL9A1P20849 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.91■■□□□ 1.1
COL9A1P20849 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.91■■□□□ 1.1
COL9A1P20849 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL9A1P20849 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.9■■□□□ 1.1
COL9A1P20849 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL9A1P20849 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.9■■□□□ 1.1
COL9A1P20849 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.9■■□□□ 1.1
COL9A1P20849 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.9■■□□□ 1.1
COL9A1P20849 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL9A1P20849 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL9A1P20849 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL9A1P20849 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.1
COL9A1P20849 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL9A1P20849 AC026396.1-201ENST00000419388 421 ntBASIC21.89■■□□□ 1.09
COL9A1P20849 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.89■■□□□ 1.09
COL9A1P20849 TERF1P5-201ENST00000477545 1207 ntBASIC21.89■■□□□ 1.09
COL9A1P20849 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL9A1P20849 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
COL9A1P20849 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.89■■□□□ 1.09
COL9A1P20849 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.89■■□□□ 1.09
COL9A1P20849 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL9A1P20849 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL9A1P20849 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.88■■□□□ 1.09
COL9A1P20849 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.88■■□□□ 1.09
COL9A1P20849 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
COL9A1P20849 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL9A1P20849 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms