Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.68■□□□□ 0.96e-8■■■□□ 18.4
YBX3P16989 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.446e-8■■■□□ 18.4
YBX3P16989 STAT3-211ENST00000585517 3319 ntTSL 5 BASIC11.96□□□□□ -0.496e-8■■■□□ 18.4
YBX3P16989 RFC2-205ENST00000473493 304 ntTSL 313.86□□□□□ -0.193e-9■■■□□ 18.4
YBX3P16989 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC18.07■□□□□ 0.487e-16■■■□□ 18.4
YBX3P16989 IGF2BP2-206ENST00000464166 380 ntTSL 36□□□□□ -1.451e-6■■■□□ 18.4
YBX3P16989 ADAM15-226ENST00000527418 4508 ntTSL 221.31■■□□□ 15e-13■■■□□ 18.4
YBX3P16989 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.04■□□□□ 0.965e-13■■■□□ 18.4
YBX3P16989 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.275e-13■■■□□ 18.4
YBX3P16989 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.215e-13■■■□□ 18.4
YBX3P16989 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.25e-13■■■□□ 18.4
YBX3P16989 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.195e-13■■■□□ 18.4
YBX3P16989 ADAM15-216ENST00000472434 2894 ntTSL 515.74■□□□□ 0.115e-13■■■□□ 18.4
YBX3P16989 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.055e-13■■■□□ 18.4
YBX3P16989 ADAM15-211ENST00000461564 2751 ntTSL 214.76□□□□□ -0.055e-13■■■□□ 18.4
YBX3P16989 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.055e-13■■■□□ 18.4
YBX3P16989 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.065e-13■■■□□ 18.4
YBX3P16989 ADAM15-227ENST00000529473 3016 ntTSL 1 (best)14.67□□□□□ -0.065e-13■■■□□ 18.4
YBX3P16989 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.075e-13■■■□□ 18.4
YBX3P16989 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.095e-13■■■□□ 18.4
YBX3P16989 ADAM15-225ENST00000526491 3091 ntTSL 1 (best)14.45□□□□□ -0.15e-13■■■□□ 18.4
YBX3P16989 RNF41-204ENST00000548120 698 ntTSL 29.84□□□□□ -0.834e-8■■■□□ 18.4
YBX3P16989 PPP2R1A-203ENST00000454220 1233 ntTSL 1 (best)20.34■□□□□ 0.851e-9■■■□□ 18.4
YBX3P16989 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.922e-6■■■□□ 18.4
YBX3P16989 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.87■■□□□ 1.892e-6■■■□□ 18.4
YBX3P16989 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.42e-6■■■□□ 18.4
YBX3P16989 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC22.67■■□□□ 1.222e-6■■■□□ 18.4
YBX3P16989 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.88■□□□□ 0.452e-6■■■□□ 18.4
YBX3P16989 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.382e-6■■■□□ 18.4
YBX3P16989 HLF-204ENST00000572002 1251 ntTSL 316.33■□□□□ 0.22e-6■■■□□ 18.4
YBX3P16989 HLF-203ENST00000570962 1310 ntTSL 215.76■□□□□ 0.112e-6■■■□□ 18.4
YBX3P16989 HLF-207ENST00000573422 493 ntTSL 415.52■□□□□ 0.082e-6■■■□□ 18.4
YBX3P16989 HLF-208ENST00000573945 2977 ntTSL 5 BASIC9.84□□□□□ -0.832e-6■■■□□ 18.4
YBX3P16989 HLF-206ENST00000573020 414 ntTSL 49.56□□□□□ -0.882e-6■■■□□ 18.4
YBX3P16989 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.56□□□□□ -1.22e-6■■■□□ 18.4
YBX3P16989 HLF-211ENST00000575868 558 ntTSL 46.94□□□□□ -1.32e-6■■■□□ 18.4
YBX3P16989 HLF-205ENST00000572234 298 ntTSL 54.54□□□□□ -1.682e-6■■■□□ 18.4
YBX3P16989 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.35■□□□□ 0.697e-13■■■□□ 18.4
YBX3P16989 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.627e-13■■■□□ 18.4
YBX3P16989 RREB1-208ENST00000483150 2833 ntTSL 1 (best)12.72□□□□□ -0.377e-13■■■□□ 18.4
YBX3P16989 UBQLN2-201ENST00000338222 4230 ntAPPRIS P1 BASIC9.89□□□□□ -0.834e-7■■■□□ 18.4
YBX3P16989 PDLIM1-205ENST00000493949 795 ntTSL 314.7□□□□□ -0.066e-10■■■□□ 18.4
YBX3P16989 RAB5C-205ENST00000550013 555 ntTSL 221.4■■□□□ 1.027e-8■■■□□ 18.4
YBX3P16989 RAB5C-206ENST00000550406 500 ntTSL 316.35■□□□□ 0.217e-8■■■□□ 18.4
YBX3P16989 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.162e-6■■■□□ 18.3
YBX3P16989 PLCD1-202ENST00000417185 685 ntTSL 222.24■■□□□ 1.152e-6■■■□□ 18.3
YBX3P16989 SPECC1-208ENST00000467722 731 ntTSL 233.87■■■■□ 3.012e-6■■■□□ 18.3
YBX3P16989 SPECC1-209ENST00000472876 614 ntTSL 321.58■■□□□ 1.052e-6■■■□□ 18.3
YBX3P16989 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.66■□□□□ 0.422e-6■■■□□ 18.3
YBX3P16989 AC004702.1-201ENST00000580225 195 ntTSL 5 BASIC15.73■□□□□ 0.112e-6■■■□□ 18.3
YBX3P16989 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.76□□□□□ -0.052e-6■■■□□ 18.3
YBX3P16989 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC13.33□□□□□ -0.282e-6■■■□□ 18.3
YBX3P16989 SPECC1-204ENST00000395527 3363 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.292e-6■■■□□ 18.3
YBX3P16989 SPECC1-205ENST00000395529 4971 ntTSL 1 (best) BASIC11.22□□□□□ -0.612e-6■■■□□ 18.3
YBX3P16989 SPECC1-201ENST00000261503 3948 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.732e-6■■■□□ 18.3
YBX3P16989 Y_RNA.294-201ENST00000364916 102 ntBASIC4.33□□□□□ -1.729e-11■■■□□ 18.3
YBX3P16989 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.09■□□□□ 0.651e-9■■■□□ 18.3
YBX3P16989 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.123e-12■■■□□ 18.3
YBX3P16989 HIST1H3D-203ENST00000635641 1637 ntTSL 521.74■■□□□ 1.073e-12■■■□□ 18.3
YBX3P16989 DIAPH1-210ENST00000494967 629 ntTSL 217.89■□□□□ 0.452e-12■■■□□ 18.3
YBX3P16989 DIAPH1-209ENST00000491754 557 ntTSL 415.39■□□□□ 0.052e-12■■■□□ 18.3
YBX3P16989 DIAPH1-212ENST00000518484 546 ntTSL 49.7□□□□□ -0.862e-12■■■□□ 18.3
YBX3P16989 ZWILCH-209ENST00000565627 1845 ntTSL 2 BASIC14.45□□□□□ -0.13e-6■■■□□ 18.3
YBX3P16989 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC14.18□□□□□ -0.143e-6■■■□□ 18.3
YBX3P16989 ZWILCH-202ENST00000446801 3256 ntTSL 1 (best) BASIC12.44□□□□□ -0.423e-6■■■□□ 18.3
YBX3P16989 ZWILCH-214ENST00000613446 3181 ntTSL 5 BASIC11.4□□□□□ -0.583e-6■■■□□ 18.3
YBX3P16989 ZWILCH-201ENST00000307897 3960 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.883e-6■■■□□ 18.3
YBX3P16989 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.643e-8■■■□□ 18.3
YBX3P16989 NPC2-208ENST00000556009 699 ntTSL 524.29■■□□□ 1.483e-8■■■□□ 18.3
YBX3P16989 NPC2-205ENST00000554482 583 ntTSL 215.4■□□□□ 0.063e-8■■■□□ 18.3
YBX3P16989 NPC2-202ENST00000434013 875 ntTSL 2 BASIC14.38□□□□□ -0.113e-8■■■□□ 18.3
YBX3P16989 NPC2-201ENST00000238633 796 ntAPPRIS ALT1 TSL 3 BASIC13.6□□□□□ -0.233e-8■■■□□ 18.3
YBX3P16989 NPC2-209ENST00000557510 1029 ntTSL 1 (best) BASIC12.48□□□□□ -0.413e-8■■■□□ 18.3
YBX3P16989 NPC2-204ENST00000553490 729 ntTSL 212.17□□□□□ -0.463e-8■■■□□ 18.3
YBX3P16989 NPC2-203ENST00000541064 1436 ntTSL 2 BASIC10.95□□□□□ -0.663e-8■■■□□ 18.3
YBX3P16989 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.33e-7■■■□□ 18.3
YBX3P16989 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.843e-7■■■□□ 18.3
YBX3P16989 GTSF1-205ENST00000548538 594 ntTSL 57.07□□□□□ -1.281e-13■■■□□ 18.3
YBX3P16989 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.59■□□□□ 0.737e-7■■■□□ 18.3
YBX3P16989 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC16.45■□□□□ 0.227e-7■■■□□ 18.3
YBX3P16989 AIMP2-201ENST00000223029 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.167e-7■■■□□ 18.3
YBX3P16989 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.341e-9■■■□□ 18.3
YBX3P16989 COPG2-202ENST00000425248 3134 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.557e-7■■■□□ 18.3
YBX3P16989 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.52□□□□□ -0.092e-6■■■□□ 18.3
YBX3P16989 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.342e-6■■■□□ 18.3
YBX3P16989 CLIC2-204ENST00000491205 516 ntTSL 27.18□□□□□ -1.262e-13■■■□□ 18.3
YBX3P16989 HNRNPL-211ENST00000601047 1127 ntTSL 522.97■■□□□ 1.274e-14■■■□□ 18.3
YBX3P16989 HNRNPL-207ENST00000598985 900 ntTSL 518.71■□□□□ 0.594e-14■■■□□ 18.3
YBX3P16989 HNRNPL-208ENST00000600233 659 ntTSL 518.59■□□□□ 0.574e-14■■■□□ 18.3
YBX3P16989 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.461e-7■■■□□ 18.3
YBX3P16989 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC9.16□□□□□ -0.941e-7■■■□□ 18.3
YBX3P16989 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.672e-15■■■□□ 18.3
YBX3P16989 KBTBD2-204ENST00000452926 537 ntTSL 415.54■□□□□ 0.082e-15■■■□□ 18.3
YBX3P16989 KBTBD2-207ENST00000485611 537 ntTSL 415.54■□□□□ 0.082e-15■■■□□ 18.3
YBX3P16989 KBTBD2-203ENST00000424468 593 ntTSL 411.7□□□□□ -0.542e-15■■■□□ 18.3
YBX3P16989 KBTBD2-202ENST00000423022 556 ntTSL 39.46□□□□□ -0.92e-15■■■□□ 18.3
YBX3P16989 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC6.82□□□□□ -1.322e-15■■■□□ 18.3
YBX3P16989 KBTBD2-205ENST00000453627 724 ntTSL 35.1□□□□□ -1.592e-15■■■□□ 18.3
YBX3P16989 LANCL1-206ENST00000448951 808 ntTSL 316.1■□□□□ 0.172e-6■■■□□ 18.3
YBX3P16989 LANCL1-203ENST00000431941 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.12e-6■■■□□ 18.3
Retrieved 100 of 29,075 protein–RNA pairs in 359.4 ms