Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
MMP3P08254 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
MMP3P08254 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MMP3P08254 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MMP3P08254 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.57■■□□□ 1.36
MMP3P08254 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.57■■□□□ 1.36
MMP3P08254 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
MMP3P08254 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.57■■□□□ 1.36
MMP3P08254 BX276092.2-201ENST00000417668 665 ntBASIC23.57■■□□□ 1.36
MMP3P08254 FAM201B-201ENST00000458407 597 ntBASIC23.57■■□□□ 1.36
MMP3P08254 AL591742.1-201ENST00000604433 565 ntBASIC23.57■■□□□ 1.36
MMP3P08254 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
MMP3P08254 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.57■■□□□ 1.36
MMP3P08254 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.57■■□□□ 1.36
MMP3P08254 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MMP3P08254 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.57■■□□□ 1.36
MMP3P08254 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MMP3P08254 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.56■■□□□ 1.36
MMP3P08254 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MMP3P08254 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.56■■□□□ 1.36
MMP3P08254 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MMP3P08254 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.56■■□□□ 1.36
MMP3P08254 RNA5SP413-201ENST00000516373 109 ntBASIC23.56■■□□□ 1.36
MMP3P08254 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
MMP3P08254 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MMP3P08254 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.56■■□□□ 1.36
MMP3P08254 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.55■■□□□ 1.36
MMP3P08254 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
MMP3P08254 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.55■■□□□ 1.36
MMP3P08254 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.55■■□□□ 1.36
MMP3P08254 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.55■■□□□ 1.36
MMP3P08254 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
MMP3P08254 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
MMP3P08254 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
MMP3P08254 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.54■■□□□ 1.36
MMP3P08254 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MMP3P08254 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.54■■□□□ 1.36
MMP3P08254 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MMP3P08254 RARRES2P4-201ENST00000514074 484 ntBASIC23.54■■□□□ 1.36
MMP3P08254 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MMP3P08254 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.54■■□□□ 1.36
MMP3P08254 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
MMP3P08254 AC080038.3-201ENST00000623346 1952 ntBASIC23.54■■□□□ 1.36
MMP3P08254 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
MMP3P08254 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.54■■□□□ 1.36
MMP3P08254 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.54■■□□□ 1.36
MMP3P08254 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.53■■□□□ 1.36
MMP3P08254 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 AC066615.1-201ENST00000640911 628 ntBASIC23.53■■□□□ 1.36
MMP3P08254 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MMP3P08254 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.52■■□□□ 1.36
MMP3P08254 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
MMP3P08254 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.52■■□□□ 1.36
MMP3P08254 AC010980.2-201ENST00000587099 1412 ntBASIC23.52■■□□□ 1.36
MMP3P08254 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.52■■□□□ 1.36
MMP3P08254 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.52■■□□□ 1.36
MMP3P08254 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.52■■□□□ 1.36
MMP3P08254 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.52■■□□□ 1.36
MMP3P08254 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.52■■□□□ 1.36
MMP3P08254 AC083880.1-201ENST00000608266 535 ntBASIC23.52■■□□□ 1.36
MMP3P08254 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.52■■□□□ 1.36
MMP3P08254 MYC-209ENST00000641252 345 ntBASIC23.52■■□□□ 1.36
MMP3P08254 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
MMP3P08254 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
MMP3P08254 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
MMP3P08254 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MMP3P08254 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MMP3P08254 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
MMP3P08254 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.51■■□□□ 1.35
MMP3P08254 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.51■■□□□ 1.35
MMP3P08254 POU5F1P3-201ENST00000428824 1078 ntBASIC23.51■■□□□ 1.35
MMP3P08254 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.51■■□□□ 1.35
MMP3P08254 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
MMP3P08254 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.51■■□□□ 1.35
MMP3P08254 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.51■■□□□ 1.35
MMP3P08254 AC026471.6-201ENST00000622954 1905 ntBASIC23.51■■□□□ 1.35
MMP3P08254 C1orf229-201ENST00000623686 2258 ntBASIC23.5■■□□□ 1.35
MMP3P08254 AC127496.7-201ENST00000625110 1798 ntBASIC23.5■■□□□ 1.35
MMP3P08254 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms