Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
HLA-DOAP06340 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HLA-DOAP06340 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 AL138781.1-201ENST00000566567 1274 ntBASIC25.01■■□□□ 1.59
HLA-DOAP06340 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HLA-DOAP06340 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
HLA-DOAP06340 AC061975.6-201ENST00000579045 1553 ntBASIC25.01■■□□□ 1.59
HLA-DOAP06340 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HLA-DOAP06340 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
HLA-DOAP06340 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25■■□□□ 1.59
HLA-DOAP06340 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
HLA-DOAP06340 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC25■■□□□ 1.59
HLA-DOAP06340 AC008694.1-202ENST00000636953 945 ntBASIC25■■□□□ 1.59
HLA-DOAP06340 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25■■□□□ 1.59
HLA-DOAP06340 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
HLA-DOAP06340 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25■■□□□ 1.59
HLA-DOAP06340 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 AC069236.1-201ENST00000604339 616 ntBASIC24.99■■□□□ 1.59
HLA-DOAP06340 FGF8-207ENST00000618991 856 ntTSL 3 BASIC24.99■■□□□ 1.59
HLA-DOAP06340 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
HLA-DOAP06340 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 RBM17P2-201ENST00000616397 1405 ntBASIC24.98■■□□□ 1.59
HLA-DOAP06340 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.98■■□□□ 1.59
HLA-DOAP06340 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
HLA-DOAP06340 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.98■■□□□ 1.59
HLA-DOAP06340 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC24.98■■□□□ 1.59
HLA-DOAP06340 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 OR10C1-204ENST00000622521 1039 ntBASIC24.97■■□□□ 1.59
HLA-DOAP06340 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HLA-DOAP06340 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.97■■□□□ 1.59
HLA-DOAP06340 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.96■■□□□ 1.59
HLA-DOAP06340 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
HLA-DOAP06340 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HLA-DOAP06340 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.95■■□□□ 1.59
HLA-DOAP06340 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HLA-DOAP06340 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 AC069152.1-201ENST00000438030 544 ntBASIC24.95■■□□□ 1.58
HLA-DOAP06340 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 AC243732.1-201ENST00000612648 864 ntBASIC24.95■■□□□ 1.58
HLA-DOAP06340 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 AC133041.1-202ENST00000642053 222 ntBASIC24.95■■□□□ 1.58
HLA-DOAP06340 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
HLA-DOAP06340 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
HLA-DOAP06340 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HLA-DOAP06340 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HLA-DOAP06340 AC026471.6-201ENST00000622954 1905 ntBASIC24.94■■□□□ 1.58
HLA-DOAP06340 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
HLA-DOAP06340 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms