Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 RPS2P7-201ENST00000447334 885 ntBASIC15.87■□□□□ 0.13
HLA-DQA1P01909 DUX4L9-201ENST00000449051 1259 ntBASIC15.87■□□□□ 0.13
HLA-DQA1P01909 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 MIR6765-201ENST00000614092 87 ntBASIC15.87■□□□□ 0.13
HLA-DQA1P01909 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DQA1P01909 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 AC018445.3-201ENST00000624177 1945 ntBASIC15.86■□□□□ 0.13
HLA-DQA1P01909 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 KRT18P60-201ENST00000312876 1297 ntBASIC15.86■□□□□ 0.13
HLA-DQA1P01909 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 AC011551.1-201ENST00000614101 683 ntBASIC15.86■□□□□ 0.13
HLA-DQA1P01909 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DQA1P01909 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 AL049796.1-201ENST00000565336 1766 ntBASIC15.85■□□□□ 0.13
HLA-DQA1P01909 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 SPCS2P3-201ENST00000500401 656 ntBASIC15.85■□□□□ 0.13
HLA-DQA1P01909 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC15.85■□□□□ 0.13
HLA-DQA1P01909 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DQA1P01909 SMG8-203ENST00000578922 2178 ntBASIC15.85■□□□□ 0.13
HLA-DQA1P01909 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 AC129492.7-201ENST00000622992 756 ntBASIC15.84■□□□□ 0.13
HLA-DQA1P01909 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 PCDHAC2-203ENST00000615316 3011 ntBASIC15.84■□□□□ 0.13
HLA-DQA1P01909 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DQA1P01909 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DQA1P01909 AC073314.1-201ENST00000568729 2216 ntBASIC15.83■□□□□ 0.13
HLA-DQA1P01909 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC15.83■□□□□ 0.13
HLA-DQA1P01909 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DQA1P01909 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DQA1P01909 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC15.83■□□□□ 0.13
HLA-DQA1P01909 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DQA1P01909 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DQA1P01909 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DQA1P01909 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms