Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC241377.3-202ENST00000626088 1088 ntBASIC20.31■□□□□ 0.84
LDLRP01130 AC241585.3-202ENST00000628937 1088 ntBASIC20.31■□□□□ 0.84
LDLRP01130 AC245100.8-202ENST00000629247 1058 ntBASIC20.31■□□□□ 0.84
LDLRP01130 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.31■□□□□ 0.84
LDLRP01130 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDLRP01130 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
LDLRP01130 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LDLRP01130 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LDLRP01130 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.3■□□□□ 0.84
LDLRP01130 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.3■□□□□ 0.84
LDLRP01130 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LDLRP01130 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LDLRP01130 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.3■□□□□ 0.84
LDLRP01130 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LDLRP01130 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.29■□□□□ 0.84
LDLRP01130 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LDLRP01130 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.29■□□□□ 0.84
LDLRP01130 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LDLRP01130 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.29■□□□□ 0.84
LDLRP01130 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
LDLRP01130 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.29■□□□□ 0.84
LDLRP01130 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.29■□□□□ 0.84
LDLRP01130 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.28■□□□□ 0.84
LDLRP01130 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LDLRP01130 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LDLRP01130 LINC01521-201ENST00000504184 1943 ntBASIC20.28■□□□□ 0.84
LDLRP01130 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
LDLRP01130 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
LDLRP01130 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.28■□□□□ 0.84
LDLRP01130 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.28■□□□□ 0.84
LDLRP01130 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LDLRP01130 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
LDLRP01130 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.28■□□□□ 0.84
LDLRP01130 FP325331.1-202ENST00000623531 1380 ntBASIC20.28■□□□□ 0.84
LDLRP01130 FEM1AP4-201ENST00000443167 1987 ntBASIC20.28■□□□□ 0.84
LDLRP01130 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDLRP01130 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LDLRP01130 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LDLRP01130 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
LDLRP01130 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
LDLRP01130 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
LDLRP01130 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.27■□□□□ 0.84
LDLRP01130 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.27■□□□□ 0.84
LDLRP01130 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.27■□□□□ 0.84
LDLRP01130 AC009086.3-201ENST00000623486 1008 ntBASIC20.27■□□□□ 0.84
LDLRP01130 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
LDLRP01130 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.27■□□□□ 0.84
LDLRP01130 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDLRP01130 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LDLRP01130 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDLRP01130 AF106564.1-201ENST00000607058 2553 ntBASIC20.27■□□□□ 0.83
LDLRP01130 C17orf82-201ENST00000623772 1530 ntBASIC20.27■□□□□ 0.83
LDLRP01130 AL157384.1-201ENST00000445995 2473 ntBASIC20.27■□□□□ 0.83
LDLRP01130 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.27■□□□□ 0.83
LDLRP01130 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.27■□□□□ 0.83
LDLRP01130 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LDLRP01130 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDLRP01130 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LDLRP01130 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.26■□□□□ 0.83
LDLRP01130 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.26■□□□□ 0.83
LDLRP01130 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms