Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.09■□□□□ 0.49
XRCC3O43542 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.09■□□□□ 0.49
XRCC3O43542 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 BX664725.1-201ENST00000438252 379 ntBASIC18.09■□□□□ 0.49
XRCC3O43542 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 AL031848.2-201ENST00000607670 837 ntBASIC18.09■□□□□ 0.49
XRCC3O43542 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.09■□□□□ 0.49
XRCC3O43542 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
XRCC3O43542 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
XRCC3O43542 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
XRCC3O43542 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
XRCC3O43542 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
XRCC3O43542 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
XRCC3O43542 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.08■□□□□ 0.49
XRCC3O43542 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
XRCC3O43542 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
XRCC3O43542 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
XRCC3O43542 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.08■□□□□ 0.48
XRCC3O43542 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
XRCC3O43542 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
XRCC3O43542 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
XRCC3O43542 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.08■□□□□ 0.48
XRCC3O43542 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 AC133637.1-201ENST00000624115 1537 ntBASIC18.08■□□□□ 0.48
XRCC3O43542 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
XRCC3O43542 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
XRCC3O43542 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.07■□□□□ 0.48
XRCC3O43542 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 AC092028.1-203ENST00000608262 953 ntBASIC18.07■□□□□ 0.48
XRCC3O43542 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 RNF165-205ENST00000588679 2904 ntBASIC18.07■□□□□ 0.48
XRCC3O43542 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.07■□□□□ 0.48
XRCC3O43542 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
XRCC3O43542 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.07■□□□□ 0.48
XRCC3O43542 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.07■□□□□ 0.48
XRCC3O43542 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.06■□□□□ 0.48
XRCC3O43542 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 KRT8P33-201ENST00000508125 1423 ntBASIC18.06■□□□□ 0.48
XRCC3O43542 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
XRCC3O43542 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.06■□□□□ 0.48
XRCC3O43542 AL451085.2-201ENST00000605085 799 ntBASIC18.06■□□□□ 0.48
XRCC3O43542 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.06■□□□□ 0.48
XRCC3O43542 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 AC003102.1-202ENST00000563394 1796 ntBASIC18.06■□□□□ 0.48
XRCC3O43542 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
XRCC3O43542 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
XRCC3O43542 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
XRCC3O43542 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
XRCC3O43542 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
XRCC3O43542 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.05■□□□□ 0.48
XRCC3O43542 AL034346.1-201ENST00000568244 1277 ntBASIC18.05■□□□□ 0.48
XRCC3O43542 Z92544.1-202ENST00000571933 1220 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms