Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.56■□□□□ 0.88
HDAC3O15379 AC010525.1-201ENST00000585559 441 ntBASIC20.56■□□□□ 0.88
HDAC3O15379 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.56■□□□□ 0.88
HDAC3O15379 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
HDAC3O15379 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
HDAC3O15379 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
HDAC3O15379 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC3O15379 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
HDAC3O15379 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC3O15379 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC3O15379 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HDAC3O15379 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HDAC3O15379 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.55■□□□□ 0.88
HDAC3O15379 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC3O15379 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC3O15379 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC3O15379 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.55■□□□□ 0.88
HDAC3O15379 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HDAC3O15379 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HDAC3O15379 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC3O15379 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HDAC3O15379 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC3O15379 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC3O15379 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.54■□□□□ 0.88
HDAC3O15379 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HDAC3O15379 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
HDAC3O15379 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC3O15379 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC3O15379 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.53■□□□□ 0.88
HDAC3O15379 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 KRT16P3-201ENST00000439127 1283 ntBASIC20.53■□□□□ 0.88
HDAC3O15379 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC3O15379 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC3O15379 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.53■□□□□ 0.88
HDAC3O15379 AC092171.4-201ENST00000609130 632 ntBASIC20.53■□□□□ 0.88
HDAC3O15379 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HDAC3O15379 AC006128.1-201ENST00000624704 1661 ntBASIC20.53■□□□□ 0.88
HDAC3O15379 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.53■□□□□ 0.88
HDAC3O15379 GABARAPL3-202ENST00000624044 1851 ntBASIC20.53■□□□□ 0.88
HDAC3O15379 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HDAC3O15379 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC3O15379 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.52■□□□□ 0.88
HDAC3O15379 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.52■□□□□ 0.88
HDAC3O15379 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HDAC3O15379 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC3O15379 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC3O15379 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC3O15379 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC3O15379 AL356740.2-201ENST00000601559 647 ntBASIC20.52■□□□□ 0.88
HDAC3O15379 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC3O15379 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms