Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UPK1AO00322 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.07■□□□□ 0.8
UPK1AO00322 AP004607.7-201ENST00000527152 1677 ntBASIC20.07■□□□□ 0.8
UPK1AO00322 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UPK1AO00322 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
UPK1AO00322 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.06■□□□□ 0.8
UPK1AO00322 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.06■□□□□ 0.8
UPK1AO00322 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UPK1AO00322 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.06■□□□□ 0.8
UPK1AO00322 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
UPK1AO00322 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UPK1AO00322 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
UPK1AO00322 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UPK1AO00322 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.05■□□□□ 0.8
UPK1AO00322 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
UPK1AO00322 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 AL034346.1-201ENST00000568244 1277 ntBASIC20.05■□□□□ 0.8
UPK1AO00322 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
UPK1AO00322 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.05■□□□□ 0.8
UPK1AO00322 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
UPK1AO00322 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UPK1AO00322 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.05■□□□□ 0.8
UPK1AO00322 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.04■□□□□ 0.8
UPK1AO00322 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
UPK1AO00322 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
UPK1AO00322 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UPK1AO00322 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
UPK1AO00322 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
UPK1AO00322 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
UPK1AO00322 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
UPK1AO00322 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.03■□□□□ 0.8
UPK1AO00322 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK1AO00322 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.03■□□□□ 0.8
UPK1AO00322 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.03■□□□□ 0.8
UPK1AO00322 AC005837.3-201ENST00000612163 286 ntBASIC20.03■□□□□ 0.8
UPK1AO00322 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
UPK1AO00322 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.03■□□□□ 0.8
UPK1AO00322 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
UPK1AO00322 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
UPK1AO00322 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
UPK1AO00322 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
UPK1AO00322 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.02■□□□□ 0.8
UPK1AO00322 AC142381.2-201ENST00000566120 298 ntBASIC20.02■□□□□ 0.8
UPK1AO00322 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.02■□□□□ 0.8
UPK1AO00322 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
UPK1AO00322 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
UPK1AO00322 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.02■□□□□ 0.79
UPK1AO00322 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
UPK1AO00322 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
UPK1AO00322 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.02■□□□□ 0.79
UPK1AO00322 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.01■□□□□ 0.79
UPK1AO00322 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
UPK1AO00322 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.01■□□□□ 0.79
UPK1AO00322 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.01■□□□□ 0.79
UPK1AO00322 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.01■□□□□ 0.79
UPK1AO00322 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
UPK1AO00322 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20■□□□□ 0.79
UPK1AO00322 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20■□□□□ 0.79
UPK1AO00322 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK1AO00322 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
UPK1AO00322 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20■□□□□ 0.79
UPK1AO00322 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20■□□□□ 0.79
UPK1AO00322 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20■□□□□ 0.79
UPK1AO00322 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
UPK1AO00322 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20■□□□□ 0.79
UPK1AO00322 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
UPK1AO00322 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms