Protein–RNA interactions for Protein: B0FP48

UPK3BL1, Uroplakin-3b-like protein 1, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BL1B0FP48 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
UPK3BL1B0FP48 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 AC073210.2-201ENST00000430369 194 ntBASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3BL1B0FP48 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3BL1B0FP48 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 AC007322.1-201ENST00000426983 750 ntBASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 FAM201B-201ENST00000458407 597 ntBASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 EEF1DP3-203ENST00000566025 782 ntBASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
UPK3BL1B0FP48 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 DUX4L16-201ENST00000555130 1264 ntBASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 FAM99A-202ENST00000538190 1989 ntBASIC21.34■■□□□ 1.01
UPK3BL1B0FP48 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 SLC29A4P1-201ENST00000398760 971 ntBASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 AC138907.5-202ENST00000569484 235 ntBASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 AP001160.3-201ENST00000601484 763 ntBASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 AC053503.5-201ENST00000601508 636 ntBASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 AC005181.1-201ENST00000604782 1256 ntBASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.33■■□□□ 1.01
UPK3BL1B0FP48 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
UPK3BL1B0FP48 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.33■■□□□ 1
UPK3BL1B0FP48 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
UPK3BL1B0FP48 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
UPK3BL1B0FP48 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
UPK3BL1B0FP48 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
UPK3BL1B0FP48 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms