Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 CDCA4P2-201ENST00000441182 718 ntBASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 ECEL1P1-201ENST00000373592 1742 ntBASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 MFSD11-216ENST00000590393 1141 ntBASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 MYCNOS-205ENST00000641950 531 ntBASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.37■■□□□ 1.49
PCDHA1Q9Y5I3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 AC012676.1-201ENST00000574705 1949 ntBASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 RAP2CP1-201ENST00000605103 478 ntBASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHA1Q9Y5I3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 SLC7A5P2-201ENST00000553010 536 ntBASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA1Q9Y5I3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA1Q9Y5I3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.33■■□□□ 1.49
PCDHA1Q9Y5I3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.48
PCDHA1Q9Y5I3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 AC008175.2-201ENST00000612840 297 ntBASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA1Q9Y5I3 AL117328.2-201ENST00000624617 1940 ntBASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 AC026185.1-201ENST00000445748 174 ntBASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms