Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
PCDHA9Q9Y5H5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
PCDHA9Q9Y5H5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.39■□□□□ 0.85
PCDHA9Q9Y5H5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PCDHA9Q9Y5H5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 MIR939-201ENST00000401314 82 ntBASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PCDHA9Q9Y5H5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 LINC01521-201ENST00000504184 1943 ntBASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PCDHA9Q9Y5H5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 RASA4CP-201ENST00000424092 1398 ntBASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 AL136967.2-201ENST00000623968 743 ntBASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHA9Q9Y5H5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 AC091305.1-201ENST00000479476 895 ntBASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 SUDS3P1-201ENST00000505831 966 ntBASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PCDHA9Q9Y5H5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHA9Q9Y5H5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms