Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 AC092068.2-201ENST00000590491 1708 ntBASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 AC128676.1-201ENST00000454392 318 ntBASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 AC142381.4-202ENST00000563973 229 ntBASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 AC006058.3-201ENST00000606217 1069 ntBASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA1Q9Y5H4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 AC010980.2-201ENST00000587099 1412 ntBASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 LINC00526-201ENST00000581067 1875 ntBASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 KRT16P2-201ENST00000414673 1423 ntBASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA1Q9Y5H4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 AL158047.1-201ENST00000445918 881 ntBASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 RPS2P4-201ENST00000476944 856 ntBASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 AC243732.1-201ENST00000612648 864 ntBASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA1Q9Y5H4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 RBM17P2-201ENST00000616397 1405 ntBASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHGA1Q9Y5H4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 AC026366.1-201ENST00000488803 879 ntBASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 UNC93B5-201ENST00000530315 699 ntBASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 ANOS2P-203ENST00000472227 1816 ntBASIC20.41■□□□□ 0.86
PCDHGA1Q9Y5H4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.4■□□□□ 0.86
PCDHGA1Q9Y5H4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms