Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 TPRG1LP1-201ENST00000598702 760 ntBASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 BX005040.4-201ENST00000637145 1518 ntBASIC20.73■□□□□ 0.91
PCDHB3Q9Y5E6 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDHB3Q9Y5E6 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 SMUG1P1-201ENST00000590640 811 ntBASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDHB3Q9Y5E6 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
PCDHB3Q9Y5E6 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 ID1-201ENST00000376105 1233 ntBASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.7■□□□□ 0.9
PCDHB3Q9Y5E6 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHB3Q9Y5E6 SLC25A24-204ENST00000569674 2357 ntBASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDHB3Q9Y5E6 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 LINC01960-201ENST00000563759 1884 ntBASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.67■□□□□ 0.9
PCDHB3Q9Y5E6 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms