Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 AL354811.1-201ENST00000610286 706 ntBASIC20.43■□□□□ 0.86
VPS4AQ9UN37 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
VPS4AQ9UN37 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 CCDC92B-201ENST00000575506 885 ntBASIC20.42■□□□□ 0.86
VPS4AQ9UN37 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 MIR6084-201ENST00000622012 110 ntBASIC20.42■□□□□ 0.86
VPS4AQ9UN37 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4AQ9UN37 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.41■□□□□ 0.86
VPS4AQ9UN37 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 AC079089.2-201ENST00000531211 1277 ntBASIC20.41■□□□□ 0.86
VPS4AQ9UN37 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 AC012414.1-201ENST00000556676 535 ntBASIC20.41■□□□□ 0.86
VPS4AQ9UN37 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4AQ9UN37 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 MIR572-201ENST00000384983 95 ntBASIC20.4■□□□□ 0.86
VPS4AQ9UN37 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 AC244015.2-201ENST00000616358 1861 ntBASIC20.4■□□□□ 0.86
VPS4AQ9UN37 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
VPS4AQ9UN37 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.39■□□□□ 0.86
VPS4AQ9UN37 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.39■□□□□ 0.86
VPS4AQ9UN37 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS4AQ9UN37 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
VPS4AQ9UN37 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 IGHV3-19-201ENST00000521488 291 ntBASIC20.39■□□□□ 0.85
VPS4AQ9UN37 KRT18P14-201ENST00000534205 1250 ntBASIC20.39■□□□□ 0.85
VPS4AQ9UN37 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 AC026310.3-201ENST00000625186 2373 ntBASIC20.39■□□□□ 0.85
VPS4AQ9UN37 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4AQ9UN37 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS4AQ9UN37 AC068587.7-201ENST00000641602 218 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms