Protein–RNA interactions for Protein: Q9H269

VPS16, Vacuolar protein sorting-associated protein 16 homolog, humanhuman

Predictions only

Length 839 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16Q9H269 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS16Q9H269 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.27■■□□□ 1.32
VPS16Q9H269 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS16Q9H269 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
VPS16Q9H269 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS16Q9H269 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS16Q9H269 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS16Q9H269 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS16Q9H269 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS16Q9H269 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS16Q9H269 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS16Q9H269 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.25■■□□□ 1.31
VPS16Q9H269 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
VPS16Q9H269 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS16Q9H269 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC23.25■■□□□ 1.31
VPS16Q9H269 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS16Q9H269 AC073130.3-201ENST00000624389 2278 ntBASIC23.25■■□□□ 1.31
VPS16Q9H269 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.25■■□□□ 1.31
VPS16Q9H269 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.24■■□□□ 1.31
VPS16Q9H269 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
VPS16Q9H269 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
VPS16Q9H269 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
VPS16Q9H269 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.24■■□□□ 1.31
VPS16Q9H269 SLC25A24-204ENST00000569674 2357 ntBASIC23.24■■□□□ 1.31
VPS16Q9H269 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
VPS16Q9H269 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS16Q9H269 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.23■■□□□ 1.31
VPS16Q9H269 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS16Q9H269 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS16Q9H269 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.23■■□□□ 1.31
VPS16Q9H269 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
VPS16Q9H269 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.22■■□□□ 1.31
VPS16Q9H269 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
VPS16Q9H269 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.22■■□□□ 1.31
VPS16Q9H269 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.22■■□□□ 1.31
VPS16Q9H269 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
VPS16Q9H269 AP006587.3-201ENST00000525742 1516 ntBASIC23.22■■□□□ 1.31
VPS16Q9H269 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
VPS16Q9H269 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.22■■□□□ 1.31
VPS16Q9H269 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.21■■□□□ 1.31
VPS16Q9H269 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 AL136116.3-201ENST00000402907 1138 ntBASIC23.21■■□□□ 1.31
VPS16Q9H269 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.21■■□□□ 1.31
VPS16Q9H269 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
VPS16Q9H269 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.21■■□□□ 1.31
VPS16Q9H269 AL049796.1-201ENST00000565336 1766 ntBASIC23.21■■□□□ 1.31
VPS16Q9H269 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
VPS16Q9H269 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.2■■□□□ 1.3
VPS16Q9H269 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS16Q9H269 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS16Q9H269 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
VPS16Q9H269 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS16Q9H269 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.2■■□□□ 1.3
VPS16Q9H269 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.2■■□□□ 1.3
VPS16Q9H269 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
VPS16Q9H269 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS16Q9H269 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
VPS16Q9H269 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
VPS16Q9H269 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms