Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 TMPOP1-202ENST00000424642 1267 ntBASIC21.23■□□□□ 0.99
VPS13AQ96RL7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 AC138932.3-201ENST00000567634 1902 ntBASIC21.22■□□□□ 0.99
VPS13AQ96RL7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS13AQ96RL7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 ARMC10P1-201ENST00000313754 855 ntBASIC21.21■□□□□ 0.99
VPS13AQ96RL7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS13AQ96RL7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 TSPY15P-201ENST00000457163 923 ntBASIC21.2■□□□□ 0.98
VPS13AQ96RL7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 CYP2T3P-201ENST00000601990 817 ntBASIC21.2■□□□□ 0.98
VPS13AQ96RL7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS13AQ96RL7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS13AQ96RL7 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.18■□□□□ 0.98
VPS13AQ96RL7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 KRT17P1-201ENST00000399211 1546 ntBASIC21.18■□□□□ 0.98
VPS13AQ96RL7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms