Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.35■□□□□ 0.85
CLIP3Q96DZ5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 AC055733.4-201ENST00000638462 1354 ntBASIC20.34■□□□□ 0.85
CLIP3Q96DZ5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 AC073111.5-205ENST00000641717 521 ntBASIC20.33■□□□□ 0.85
CLIP3Q96DZ5 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CLIP3Q96DZ5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIP3Q96DZ5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 AC087742.1-201ENST00000575880 1738 ntBASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 AC011767.1-201ENST00000617410 1153 ntBASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIP3Q96DZ5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 AC137767.1-201ENST00000602918 1920 ntBASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 ID1-201ENST00000376105 1233 ntBASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 CDCA4P2-201ENST00000441182 718 ntBASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms