Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 KRT18P20-201ENST00000548986 1279 ntBASIC21.28■■□□□ 1
ECHDC3Q96DC8 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 AL137784.2-201ENST00000607332 1000 ntBASIC21.28■■□□□ 1
ECHDC3Q96DC8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.28■■□□□ 1
ECHDC3Q96DC8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
ECHDC3Q96DC8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.27■■□□□ 1
ECHDC3Q96DC8 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.27■■□□□ 1
ECHDC3Q96DC8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ECHDC3Q96DC8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
ECHDC3Q96DC8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
ECHDC3Q96DC8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 AC016769.1-201ENST00000409132 1010 ntBASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 KRT18P11-201ENST00000435214 1283 ntBASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
ECHDC3Q96DC8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ECHDC3Q96DC8 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 UBE2DNL-204ENST00000602536 740 ntBASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
ECHDC3Q96DC8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
ECHDC3Q96DC8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ECHDC3Q96DC8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
ECHDC3Q96DC8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
ECHDC3Q96DC8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ECHDC3Q96DC8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ECHDC3Q96DC8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms