Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TTC28Q96AY4 AC026396.1-201ENST00000419388 421 ntBASIC21.94■■□□□ 1.1
TTC28Q96AY4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TTC28Q96AY4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TTC28Q96AY4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TTC28Q96AY4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TTC28Q96AY4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.93■■□□□ 1.1
TTC28Q96AY4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
TTC28Q96AY4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TTC28Q96AY4 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
TTC28Q96AY4 EEF1DP3-203ENST00000566025 782 ntBASIC21.93■■□□□ 1.1
TTC28Q96AY4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.93■■□□□ 1.1
TTC28Q96AY4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TTC28Q96AY4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.93■■□□□ 1.1
TTC28Q96AY4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 MIR6786-201ENST00000616843 113 ntBASIC21.92■■□□□ 1.1
TTC28Q96AY4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 LSM12P1-201ENST00000411836 588 ntBASIC21.92■■□□□ 1.1
TTC28Q96AY4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.92■■□□□ 1.1
TTC28Q96AY4 RARRES2P10-201ENST00000564312 460 ntBASIC21.92■■□□□ 1.1
TTC28Q96AY4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TTC28Q96AY4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.91■■□□□ 1.1
TTC28Q96AY4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TTC28Q96AY4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 AL591742.1-201ENST00000604433 565 ntBASIC21.9■■□□□ 1.1
TTC28Q96AY4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 RBM17P2-201ENST00000616397 1405 ntBASIC21.9■■□□□ 1.1
TTC28Q96AY4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
TTC28Q96AY4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TTC28Q96AY4 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TTC28Q96AY4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
TTC28Q96AY4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.89■■□□□ 1.1
TTC28Q96AY4 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.89■■□□□ 1.1
TTC28Q96AY4 KRT18P56-201ENST00000507275 550 ntBASIC21.89■■□□□ 1.1
TTC28Q96AY4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
TTC28Q96AY4 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
TTC28Q96AY4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
TTC28Q96AY4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TTC28Q96AY4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TTC28Q96AY4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.89■■□□□ 1.09
TTC28Q96AY4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.89■■□□□ 1.09
TTC28Q96AY4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
TTC28Q96AY4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TTC28Q96AY4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.89■■□□□ 1.09
TTC28Q96AY4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 AC239809.2-201ENST00000415381 517 ntBASIC21.88■■□□□ 1.09
TTC28Q96AY4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.88■■□□□ 1.09
TTC28Q96AY4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TTC28Q96AY4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.88■■□□□ 1.09
TTC28Q96AY4 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TTC28Q96AY4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms