Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SKA3Q8IX90 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SKA3Q8IX90 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.72■□□□□ 0.59
SKA3Q8IX90 FBXW4P1-201ENST00000426721 2239 ntBASIC18.72■□□□□ 0.59
SKA3Q8IX90 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SKA3Q8IX90 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 AC010542.4-201ENST00000563151 1910 ntBASIC18.71■□□□□ 0.59
SKA3Q8IX90 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SKA3Q8IX90 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SKA3Q8IX90 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SKA3Q8IX90 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
SKA3Q8IX90 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
SKA3Q8IX90 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
SKA3Q8IX90 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 AC055733.4-201ENST00000638462 1354 ntBASIC18.7■□□□□ 0.58
SKA3Q8IX90 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.7■□□□□ 0.58
SKA3Q8IX90 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SKA3Q8IX90 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SKA3Q8IX90 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 AC003102.1-202ENST00000563394 1796 ntBASIC18.69■□□□□ 0.58
SKA3Q8IX90 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.69■□□□□ 0.58
SKA3Q8IX90 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA3Q8IX90 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA3Q8IX90 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SKA3Q8IX90 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA3Q8IX90 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SKA3Q8IX90 LINC02228-203ENST00000641970 1355 ntBASIC18.68■□□□□ 0.58
SKA3Q8IX90 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 AC123595.1-201ENST00000440769 1046 ntBASIC18.67■□□□□ 0.58
SKA3Q8IX90 YBX1P1-201ENST00000445822 960 ntBASIC18.67■□□□□ 0.58
SKA3Q8IX90 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms