Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 AP003097.1-201ENST00000530657 1135 ntBASIC14.91□□□□□ -0.02
CSMD3Q7Z407 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 AL359736.2-201ENST00000621992 437 ntBASIC14.91□□□□□ -0.02
CSMD3Q7Z407 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
CSMD3Q7Z407 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 AL445228.2-201ENST00000605589 952 ntBASIC14.9□□□□□ -0.02
CSMD3Q7Z407 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
CSMD3Q7Z407 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 LINC00526-201ENST00000581067 1875 ntBASIC14.89□□□□□ -0.03
CSMD3Q7Z407 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CSMD3Q7Z407 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 ABHD17AP6-201ENST00000458502 1044 ntBASIC14.88□□□□□ -0.03
CSMD3Q7Z407 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 RBM17P2-201ENST00000616397 1405 ntBASIC14.88□□□□□ -0.03
CSMD3Q7Z407 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 SNORA78-201ENST00000459373 127 ntBASIC14.88□□□□□ -0.03
CSMD3Q7Z407 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC14.88□□□□□ -0.03
CSMD3Q7Z407 KRT17P1-201ENST00000399211 1546 ntBASIC14.88□□□□□ -0.03
CSMD3Q7Z407 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 MIR718-201ENST00000390190 70 ntBASIC14.87□□□□□ -0.03
CSMD3Q7Z407 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CSMD3Q7Z407 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms