Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PRKDCP78527 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.6■□□□□ 0.09
PRKDCP78527 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PRKDCP78527 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PRKDCP78527 PNMA6B-201ENST00000538162 1200 ntBASIC15.6■□□□□ 0.09
PRKDCP78527 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
PRKDCP78527 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.59■□□□□ 0.09
PRKDCP78527 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.59■□□□□ 0.09
PRKDCP78527 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 AC113347.1-201ENST00000413321 391 ntBASIC15.59■□□□□ 0.09
PRKDCP78527 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 KRT18P57-201ENST00000443599 1254 ntBASIC15.59■□□□□ 0.09
PRKDCP78527 MIR6786-201ENST00000616843 113 ntBASIC15.59■□□□□ 0.09
PRKDCP78527 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC15.59■□□□□ 0.09
PRKDCP78527 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.59■□□□□ 0.09
PRKDCP78527 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 KRT17P2-201ENST00000300992 1314 ntBASIC15.59■□□□□ 0.09
PRKDCP78527 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC15.59■□□□□ 0.09
PRKDCP78527 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PRKDCP78527 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.59■□□□□ 0.09
PRKDCP78527 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PRKDCP78527 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PRKDCP78527 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.09
PRKDCP78527 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
PRKDCP78527 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PRKDCP78527 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
PRKDCP78527 AL590326.2-201ENST00000625139 305 ntBASIC15.58■□□□□ 0.09
PRKDCP78527 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PRKDCP78527 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 AL049597.2-201ENST00000565575 961 ntBASIC15.58■□□□□ 0.08
PRKDCP78527 AC060766.5-201ENST00000590539 871 ntBASIC15.58■□□□□ 0.08
PRKDCP78527 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PRKDCP78527 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKDCP78527 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKDCP78527 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKDCP78527 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 LINC00543-201ENST00000567234 1845 ntBASIC15.57■□□□□ 0.08
PRKDCP78527 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.57■□□□□ 0.08
PRKDCP78527 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PRKDCP78527 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.57■□□□□ 0.08
PRKDCP78527 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKDCP78527 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PRKDCP78527 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
PRKDCP78527 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.57■□□□□ 0.08
PRKDCP78527 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.56■□□□□ 0.08
PRKDCP78527 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.56■□□□□ 0.08
PRKDCP78527 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC15.56■□□□□ 0.08
PRKDCP78527 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PRKDCP78527 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC15.56■□□□□ 0.08
PRKDCP78527 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PRKDCP78527 PRKY-204ENST00000533551 1019 ntBASIC15.56■□□□□ 0.08
PRKDCP78527 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PRKDCP78527 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms