Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.65■□□□□ 0.74
RNF4P78317 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
RNF4P78317 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 C11orf96-202ENST00000528572 1834 ntBASIC19.65■□□□□ 0.74
RNF4P78317 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.65■□□□□ 0.74
RNF4P78317 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.64■□□□□ 0.74
RNF4P78317 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RNF4P78317 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
RNF4P78317 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RNF4P78317 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF4P78317 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.64■□□□□ 0.73
RNF4P78317 AC016769.1-201ENST00000409132 1010 ntBASIC19.64■□□□□ 0.73
RNF4P78317 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.64■□□□□ 0.73
RNF4P78317 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.64■□□□□ 0.73
RNF4P78317 AP001160.3-201ENST00000601484 763 ntBASIC19.64■□□□□ 0.73
RNF4P78317 AC092437.1-201ENST00000624794 1048 ntBASIC19.64■□□□□ 0.73
RNF4P78317 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RNF4P78317 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RNF4P78317 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF4P78317 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF4P78317 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.63■□□□□ 0.73
RNF4P78317 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.63■□□□□ 0.73
RNF4P78317 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 EP400NL-214ENST00000641289 2402 ntBASIC19.63■□□□□ 0.73
RNF4P78317 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RNF4P78317 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RNF4P78317 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.62■□□□□ 0.73
RNF4P78317 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF4P78317 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF4P78317 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.62■□□□□ 0.73
RNF4P78317 AC006015.1-201ENST00000429970 570 ntBASIC19.62■□□□□ 0.73
RNF4P78317 AC010141.2-201ENST00000452426 721 ntBASIC19.62■□□□□ 0.73
RNF4P78317 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF4P78317 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.62■□□□□ 0.73
RNF4P78317 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.62■□□□□ 0.73
RNF4P78317 AL137784.2-201ENST00000607332 1000 ntBASIC19.62■□□□□ 0.73
RNF4P78317 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF4P78317 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
RNF4P78317 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RNF4P78317 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RNF4P78317 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RNF4P78317 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.62■□□□□ 0.73
RNF4P78317 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
RNF4P78317 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF4P78317 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.61■□□□□ 0.73
RNF4P78317 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.61■□□□□ 0.73
RNF4P78317 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
RNF4P78317 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.61■□□□□ 0.73
RNF4P78317 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RNF4P78317 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
RNF4P78317 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
RNF4P78317 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RNF4P78317 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
RNF4P78317 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF4P78317 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF4P78317 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.6■□□□□ 0.73
RNF4P78317 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RNF4P78317 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
RNF4P78317 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 AC004911.1-201ENST00000416316 871 ntBASIC19.59■□□□□ 0.73
RNF4P78317 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF4P78317 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
RNF4P78317 KRT18P11-201ENST00000435214 1283 ntBASIC19.59■□□□□ 0.73
RNF4P78317 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.59■□□□□ 0.73
RNF4P78317 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RNF4P78317 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms