Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.86■□□□□ 0.77
RFX3P48380 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
RFX3P48380 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.86■□□□□ 0.77
RFX3P48380 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFX3P48380 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.85■□□□□ 0.77
RFX3P48380 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 MIR572-201ENST00000384983 95 ntBASIC19.85■□□□□ 0.77
RFX3P48380 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.85■□□□□ 0.77
RFX3P48380 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.85■□□□□ 0.77
RFX3P48380 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
RFX3P48380 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.85■□□□□ 0.77
RFX3P48380 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
RFX3P48380 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
RFX3P48380 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.85■□□□□ 0.77
RFX3P48380 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.85■□□□□ 0.77
RFX3P48380 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX3P48380 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.85■□□□□ 0.77
RFX3P48380 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
RFX3P48380 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.84■□□□□ 0.77
RFX3P48380 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.84■□□□□ 0.77
RFX3P48380 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX3P48380 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.84■□□□□ 0.77
RFX3P48380 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RFX3P48380 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.83■□□□□ 0.77
RFX3P48380 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RFX3P48380 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RFX3P48380 AC010542.4-201ENST00000563151 1910 ntBASIC19.83■□□□□ 0.77
RFX3P48380 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RFX3P48380 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
RFX3P48380 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
RFX3P48380 AL034346.1-201ENST00000568244 1277 ntBASIC19.83■□□□□ 0.77
RFX3P48380 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
RFX3P48380 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.83■□□□□ 0.76
RFX3P48380 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.76
RFX3P48380 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
RFX3P48380 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFX3P48380 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFX3P48380 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.83■□□□□ 0.76
RFX3P48380 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.83■□□□□ 0.76
RFX3P48380 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.82■□□□□ 0.76
RFX3P48380 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.82■□□□□ 0.76
RFX3P48380 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.82■□□□□ 0.76
RFX3P48380 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.82■□□□□ 0.76
RFX3P48380 MIR6084-201ENST00000622012 110 ntBASIC19.82■□□□□ 0.76
RFX3P48380 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.82■□□□□ 0.76
RFX3P48380 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
RFX3P48380 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RFX3P48380 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX3P48380 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX3P48380 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFX3P48380 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RFX3P48380 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RFX3P48380 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFX3P48380 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX3P48380 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RFX3P48380 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX3P48380 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.81■□□□□ 0.76
RFX3P48380 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX3P48380 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX3P48380 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms