Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMS3P0CW19 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMS3P0CW19 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMS3P0CW19 AC073314.1-201ENST00000568729 2216 ntBASIC18.84■□□□□ 0.61
LIMS3P0CW19 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMS3P0CW19 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.83■□□□□ 0.61
LIMS3P0CW19 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.83■□□□□ 0.61
LIMS3P0CW19 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMS3P0CW19 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.83■□□□□ 0.6
LIMS3P0CW19 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LIMS3P0CW19 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMS3P0CW19 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LIMS3P0CW19 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMS3P0CW19 AC006128.1-201ENST00000624704 1661 ntBASIC18.82■□□□□ 0.6
LIMS3P0CW19 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LIMS3P0CW19 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIMS3P0CW19 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMS3P0CW19 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMS3P0CW19 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMS3P0CW19 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMS3P0CW19 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMS3P0CW19 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMS3P0CW19 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 TSPY9P-201ENST00000440215 945 ntBASIC18.8■□□□□ 0.6
LIMS3P0CW19 TSPY11P-201ENST00000442607 1045 ntBASIC18.8■□□□□ 0.6
LIMS3P0CW19 AC010141.3-201ENST00000456659 717 ntBASIC18.8■□□□□ 0.6
LIMS3P0CW19 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 AC087239.1-201ENST00000622671 572 ntBASIC18.8■□□□□ 0.6
LIMS3P0CW19 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMS3P0CW19 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMS3P0CW19 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMS3P0CW19 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
LIMS3P0CW19 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMS3P0CW19 PLK5-205ENST00000642079 1969 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms