Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.29■□□□□ 0.84
SEMA3DO95025 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.29■□□□□ 0.84
SEMA3DO95025 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEMA3DO95025 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEMA3DO95025 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.28■□□□□ 0.84
SEMA3DO95025 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.28■□□□□ 0.84
SEMA3DO95025 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.28■□□□□ 0.84
SEMA3DO95025 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.28■□□□□ 0.84
SEMA3DO95025 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SEMA3DO95025 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.28■□□□□ 0.84
SEMA3DO95025 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
SEMA3DO95025 AL358852.1-201ENST00000623174 1268 ntBASIC20.28■□□□□ 0.84
SEMA3DO95025 AC055733.4-201ENST00000638462 1354 ntBASIC20.28■□□□□ 0.84
SEMA3DO95025 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEMA3DO95025 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
SEMA3DO95025 AC005224.4-201ENST00000583262 1652 ntBASIC20.28■□□□□ 0.84
SEMA3DO95025 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.28■□□□□ 0.84
SEMA3DO95025 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SEMA3DO95025 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SEMA3DO95025 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.27■□□□□ 0.84
SEMA3DO95025 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.27■□□□□ 0.84
SEMA3DO95025 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SEMA3DO95025 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.27■□□□□ 0.84
SEMA3DO95025 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SEMA3DO95025 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SEMA3DO95025 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
SEMA3DO95025 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.27■□□□□ 0.83
SEMA3DO95025 Z98882.1-201ENST00000622160 2253 ntBASIC20.27■□□□□ 0.83
SEMA3DO95025 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.26■□□□□ 0.83
SEMA3DO95025 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SEMA3DO95025 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.26■□□□□ 0.83
SEMA3DO95025 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.26■□□□□ 0.83
SEMA3DO95025 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.26■□□□□ 0.83
SEMA3DO95025 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.26■□□□□ 0.83
SEMA3DO95025 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.26■□□□□ 0.83
SEMA3DO95025 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.26■□□□□ 0.83
SEMA3DO95025 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.26■□□□□ 0.83
SEMA3DO95025 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.26■□□□□ 0.83
SEMA3DO95025 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SEMA3DO95025 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.25■□□□□ 0.83
SEMA3DO95025 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SEMA3DO95025 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SEMA3DO95025 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.25■□□□□ 0.83
SEMA3DO95025 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SEMA3DO95025 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SEMA3DO95025 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SEMA3DO95025 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 AC105265.2-201ENST00000467189 838 ntBASIC20.24■□□□□ 0.83
SEMA3DO95025 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.24■□□□□ 0.83
SEMA3DO95025 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.24■□□□□ 0.83
SEMA3DO95025 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 PKD1P6-201ENST00000343738 4769 ntBASIC20.24■□□□□ 0.83
SEMA3DO95025 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.24■□□□□ 0.83
SEMA3DO95025 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.24■□□□□ 0.83
SEMA3DO95025 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SEMA3DO95025 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 AC026310.3-201ENST00000625186 2373 ntBASIC20.23■□□□□ 0.83
SEMA3DO95025 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
SEMA3DO95025 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SEMA3DO95025 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.23■□□□□ 0.83
SEMA3DO95025 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms