Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LDB3O75112 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
LDB3O75112 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.98■□□□□ 0.79
LDB3O75112 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LDB3O75112 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.98■□□□□ 0.79
LDB3O75112 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.98■□□□□ 0.79
LDB3O75112 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.98■□□□□ 0.79
LDB3O75112 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LDB3O75112 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.98■□□□□ 0.79
LDB3O75112 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.98■□□□□ 0.79
LDB3O75112 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.98■□□□□ 0.79
LDB3O75112 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDB3O75112 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.97■□□□□ 0.79
LDB3O75112 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.97■□□□□ 0.79
LDB3O75112 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.97■□□□□ 0.79
LDB3O75112 AC034268.1-201ENST00000441047 882 ntBASIC19.97■□□□□ 0.79
LDB3O75112 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.97■□□□□ 0.79
LDB3O75112 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.97■□□□□ 0.79
LDB3O75112 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.97■□□□□ 0.79
LDB3O75112 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.97■□□□□ 0.79
LDB3O75112 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.97■□□□□ 0.79
LDB3O75112 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LDB3O75112 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LDB3O75112 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
LDB3O75112 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.96■□□□□ 0.79
LDB3O75112 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LDB3O75112 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
LDB3O75112 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.95■□□□□ 0.78
LDB3O75112 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.95■□□□□ 0.78
LDB3O75112 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
LDB3O75112 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
LDB3O75112 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.95■□□□□ 0.78
LDB3O75112 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
LDB3O75112 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.95■□□□□ 0.78
LDB3O75112 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.95■□□□□ 0.78
LDB3O75112 AC104564.3-201ENST00000582367 638 ntBASIC19.95■□□□□ 0.78
LDB3O75112 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.95■□□□□ 0.78
LDB3O75112 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LDB3O75112 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB3O75112 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 KRT87P-202ENST00000534226 1464 ntBASIC19.94■□□□□ 0.78
LDB3O75112 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDB3O75112 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB3O75112 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB3O75112 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB3O75112 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.94■□□□□ 0.78
LDB3O75112 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.94■□□□□ 0.78
LDB3O75112 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB3O75112 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB3O75112 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDB3O75112 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB3O75112 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB3O75112 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB3O75112 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.93■□□□□ 0.78
LDB3O75112 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB3O75112 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
LDB3O75112 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms