Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 AC069236.1-201ENST00000604339 616 ntBASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 AC016405.3-201ENST00000607710 860 ntBASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 AC092118.2-201ENST00000613495 667 ntBASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CCDC61Q9Y6R9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
CCDC61Q9Y6R9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 AC008694.1-202ENST00000636953 945 ntBASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC29.29■■■□□ 2.28
CCDC61Q9Y6R9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 KRT16P2-201ENST00000414673 1423 ntBASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 RBM17P2-201ENST00000616397 1405 ntBASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC29.28■■■□□ 2.28
CCDC61Q9Y6R9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CCDC61Q9Y6R9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC29.26■■■□□ 2.28
CCDC61Q9Y6R9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC29.26■■■□□ 2.28
CCDC61Q9Y6R9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 POU5F1P3-201ENST00000428824 1078 ntBASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 AL162412.1-201ENST00000567129 965 ntBASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
CCDC61Q9Y6R9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CCDC61Q9Y6R9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC29.24■■■□□ 2.27
CCDC61Q9Y6R9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 AC243732.1-201ENST00000612648 864 ntBASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC29.23■■■□□ 2.27
CCDC61Q9Y6R9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 RNA5SP413-201ENST00000516373 109 ntBASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 AL591742.1-201ENST00000604433 565 ntBASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
CCDC61Q9Y6R9 MYC-209ENST00000641252 345 ntBASIC29.22■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms