Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC010141.2-201ENST00000452426 721 ntBASIC24.46■■□□□ 1.51
PCDHA1Q9Y5I3 AC090192.1-201ENST00000517740 490 ntBASIC24.46■■□□□ 1.51
PCDHA1Q9Y5I3 AC080038.1-201ENST00000611274 1154 ntBASIC24.46■■□□□ 1.51
PCDHA1Q9Y5I3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PCDHA1Q9Y5I3 FAM99A-202ENST00000538190 1989 ntBASIC24.45■■□□□ 1.51
PCDHA1Q9Y5I3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
PCDHA1Q9Y5I3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
PCDHA1Q9Y5I3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC24.45■■□□□ 1.51
PCDHA1Q9Y5I3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHA1Q9Y5I3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 BID-214ENST00000617586 542 ntTSL 5 BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 AC133561.1-201ENST00000568600 2415 ntBASIC24.44■■□□□ 1.5
PCDHA1Q9Y5I3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 UBE2DNL-204ENST00000602536 740 ntBASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA1Q9Y5I3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA1Q9Y5I3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 AC011767.1-201ENST00000617410 1153 ntBASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA1Q9Y5I3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 AC010542.4-201ENST00000563151 1910 ntBASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA1Q9Y5I3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHA1Q9Y5I3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.39■■□□□ 1.5
PCDHA1Q9Y5I3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 KRT18P20-201ENST00000548986 1279 ntBASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 AC073111.5-205ENST00000641717 521 ntBASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.39■■□□□ 1.49
PCDHA1Q9Y5I3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA1Q9Y5I3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms