Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 MIPEPP3-201ENST00000412105 444 ntBASIC19.29■□□□□ 0.68
SHANK1Q9Y566 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK1Q9Y566 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SHANK1Q9Y566 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 BX276092.2-201ENST00000417668 665 ntBASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AL596275.1-201ENST00000423464 877 ntBASIC19.27■□□□□ 0.68
SHANK1Q9Y566 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AC092118.2-201ENST00000613495 667 ntBASIC19.27■□□□□ 0.68
SHANK1Q9Y566 OR10C1-204ENST00000622521 1039 ntBASIC19.27■□□□□ 0.68
SHANK1Q9Y566 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AL512625.2-201ENST00000417533 625 ntBASIC19.27■□□□□ 0.68
SHANK1Q9Y566 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK1Q9Y566 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.26■□□□□ 0.67
SHANK1Q9Y566 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 TERF1P5-201ENST00000477545 1207 ntBASIC19.26■□□□□ 0.67
SHANK1Q9Y566 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 UNC93B5-201ENST00000530315 699 ntBASIC19.26■□□□□ 0.67
SHANK1Q9Y566 EEF1DP3-203ENST00000566025 782 ntBASIC19.26■□□□□ 0.67
SHANK1Q9Y566 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK1Q9Y566 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK1Q9Y566 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK1Q9Y566 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK1Q9Y566 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.25■□□□□ 0.67
SHANK1Q9Y566 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK1Q9Y566 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms