Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 AF201337.1-201ENST00000520239 748 ntBASIC25.3■■□□□ 1.64
DDX4Q9NQI0 AC105036.2-201ENST00000569468 176 ntBASIC25.3■■□□□ 1.64
DDX4Q9NQI0 AC133552.2-202ENST00000575694 574 ntBASIC25.3■■□□□ 1.64
DDX4Q9NQI0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
DDX4Q9NQI0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 AC013268.1-206ENST00000638368 961 ntBASIC25.29■■□□□ 1.64
DDX4Q9NQI0 AC112229.1-201ENST00000639295 961 ntBASIC25.29■■□□□ 1.64
DDX4Q9NQI0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.29■■□□□ 1.64
DDX4Q9NQI0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 C1orf229-201ENST00000623686 2258 ntBASIC25.28■■□□□ 1.64
DDX4Q9NQI0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
DDX4Q9NQI0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 CYP2T1P-201ENST00000432607 1285 ntBASIC25.27■■□□□ 1.64
DDX4Q9NQI0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 AC080038.3-201ENST00000623346 1952 ntBASIC25.27■■□□□ 1.64
DDX4Q9NQI0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
DDX4Q9NQI0 SLC29A4P1-201ENST00000398760 971 ntBASIC25.26■■□□□ 1.63
DDX4Q9NQI0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.26■■□□□ 1.63
DDX4Q9NQI0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 AC007322.4-201ENST00000509611 723 ntBASIC25.25■■□□□ 1.63
DDX4Q9NQI0 CD99P1-205ENST00000527459 561 ntBASIC25.25■■□□□ 1.63
DDX4Q9NQI0 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
DDX4Q9NQI0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 AC003102.1-202ENST00000563394 1796 ntBASIC25.24■■□□□ 1.63
DDX4Q9NQI0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 MARS-234ENST00000630571 216 ntTSL 5 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 MARS-235ENST00000630803 183 ntTSL 3 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC25.24■■□□□ 1.63
DDX4Q9NQI0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
DDX4Q9NQI0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
DDX4Q9NQI0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
DDX4Q9NQI0 AC069152.1-201ENST00000438030 544 ntBASIC25.23■■□□□ 1.63
DDX4Q9NQI0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
DDX4Q9NQI0 KRT18P6-201ENST00000555540 1265 ntBASIC25.23■■□□□ 1.63
DDX4Q9NQI0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.23■■□□□ 1.63
DDX4Q9NQI0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 AC026471.6-201ENST00000622954 1905 ntBASIC25.22■■□□□ 1.63
DDX4Q9NQI0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
DDX4Q9NQI0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms