Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS13AQ96RL7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 AC138907.5-202ENST00000569484 235 ntBASIC21.3■■□□□ 1
VPS13AQ96RL7 AL359736.2-201ENST00000621992 437 ntBASIC21.3■■□□□ 1
VPS13AQ96RL7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS13AQ96RL7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS13AQ96RL7 RPPH1-201ENST00000516869 333 ntBASIC21.3■■□□□ 1
VPS13AQ96RL7 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.3■■□□□ 1
VPS13AQ96RL7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
VPS13AQ96RL7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.3■■□□□ 1
VPS13AQ96RL7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.3■■□□□ 1
VPS13AQ96RL7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS13AQ96RL7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.29■■□□□ 1
VPS13AQ96RL7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.29■■□□□ 1
VPS13AQ96RL7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.29■■□□□ 1
VPS13AQ96RL7 AL162412.1-201ENST00000567129 965 ntBASIC21.29■■□□□ 1
VPS13AQ96RL7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS13AQ96RL7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS13AQ96RL7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS13AQ96RL7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS13AQ96RL7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.28■■□□□ 1
VPS13AQ96RL7 KRT18P35-201ENST00000510488 1269 ntBASIC21.28■■□□□ 1
VPS13AQ96RL7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.28■■□□□ 1
VPS13AQ96RL7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.28■■□□□ 1
VPS13AQ96RL7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.28■■□□□ 1
VPS13AQ96RL7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.28■■□□□ 1
VPS13AQ96RL7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.28■■□□□ 1
VPS13AQ96RL7 AC068587.7-201ENST00000641602 218 ntBASIC21.28■■□□□ 1
VPS13AQ96RL7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS13AQ96RL7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
VPS13AQ96RL7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VPS13AQ96RL7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.28■■□□□ 1
VPS13AQ96RL7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
VPS13AQ96RL7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.27■■□□□ 1
VPS13AQ96RL7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
VPS13AQ96RL7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.27■■□□□ 1
VPS13AQ96RL7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.27■■□□□ 1
VPS13AQ96RL7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS13AQ96RL7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.27■■□□□ 1
VPS13AQ96RL7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
VPS13AQ96RL7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
VPS13AQ96RL7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 AC069236.1-201ENST00000604339 616 ntBASIC21.26■□□□□ 0.99
VPS13AQ96RL7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS13AQ96RL7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 AC145676.1-201ENST00000514988 2004 ntBASIC21.25■□□□□ 0.99
VPS13AQ96RL7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS13AQ96RL7 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 AC012618.2-201ENST00000428058 849 ntBASIC21.24■□□□□ 0.99
VPS13AQ96RL7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS13AQ96RL7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS13AQ96RL7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms