Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 FAM99A-202ENST00000538190 1989 ntBASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 DBI-210ENST00000542275 757 ntTSL 5 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
NKX2-3Q8TAU0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
NKX2-3Q8TAU0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
NKX2-3Q8TAU0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
NKX2-3Q8TAU0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.33■■□□□ 1.64
NKX2-3Q8TAU0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 CROCCP5-201ENST00000436658 830 ntBASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
NKX2-3Q8TAU0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
NKX2-3Q8TAU0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC25.31■■□□□ 1.64
NKX2-3Q8TAU0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC25.31■■□□□ 1.64
NKX2-3Q8TAU0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.31■■□□□ 1.64
NKX2-3Q8TAU0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 AC010542.4-201ENST00000563151 1910 ntBASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 AP006587.3-201ENST00000525742 1516 ntBASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
NKX2-3Q8TAU0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
NKX2-3Q8TAU0 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 GPX1P1-201ENST00000388829 606 ntBASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 TSPY20P-201ENST00000450910 630 ntBASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
NKX2-3Q8TAU0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.27■■□□□ 1.64
NKX2-3Q8TAU0 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 AC004854.2-201ENST00000608450 1441 ntBASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 AP004607.4-201ENST00000530158 1459 ntBASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 AC003102.1-202ENST00000563394 1796 ntBASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
NKX2-3Q8TAU0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC25.25■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms