Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC1BQ8NDV3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 RPS2P55-201ENST00000397318 883 ntBASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 NME6-213ENST00000451657 871 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 AC107956.1-201ENST00000494359 873 ntBASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 EEF1DP3-203ENST00000566025 782 ntBASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 CD177P1-201ENST00000606252 935 ntBASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
SMC1BQ8NDV3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC25.48■■□□□ 1.67
SMC1BQ8NDV3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 AC120498.10-201ENST00000621827 505 ntBASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMC1BQ8NDV3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 AC233263.1-201ENST00000578059 224 ntBASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 AC053503.5-201ENST00000601508 636 ntBASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 AL590326.2-201ENST00000625139 305 ntBASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.46■■□□□ 1.67
SMC1BQ8NDV3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SMC1BQ8NDV3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 RN7SL850P-201ENST00000579959 291 ntBASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 AC069544.1-201ENST00000609399 999 ntBASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC25.44■■□□□ 1.66
SMC1BQ8NDV3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SMC1BQ8NDV3 PRKY-204ENST00000533551 1019 ntBASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms