Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 AC004687.1-201ENST00000579003 1625 ntBASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DEPDC4Q8N2C3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 MIR638-201ENST00000385237 100 ntBASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
DEPDC4Q8N2C3 AF106564.1-201ENST00000607058 2553 ntBASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 PBX2P1-201ENST00000493219 1291 ntBASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 AC133561.4-201ENST00000566112 224 ntBASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 AC110285.6-201ENST00000617652 491 ntBASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DEPDC4Q8N2C3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DEPDC4Q8N2C3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DEPDC4Q8N2C3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 UNC93B3-201ENST00000308076 687 ntBASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
DEPDC4Q8N2C3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.63■□□□□ 0.73
DEPDC4Q8N2C3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms